New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 924621	46 (0.940)	3 (0.060)	3/252	NT	6.0%	coding (572/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 924633	50 (1.060)					coding (560/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

CTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAGGGCC  >  NC_002947/924485‑924776                                                                                                                                                     |                                                                                                                                                cTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGt                                                                                                                                                 >  1:200473/1‑149 (MQ=255) cTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGt                                                                                                                                                 >  4:149775/1‑149 (MQ=255)       ccGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGcca                                                                                                                                           >  7:35195/1‑149 (MQ=255)              agGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGa                                                                                                                                    <  5:50147/149‑1 (MQ=255)                gcgcATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTCGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAg                                                                                                                                  <  7:205887/149‑1 (MQ=255)                   cATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGa                                                                                                                               <  2:55354/149‑1 (MQ=255)                    aTGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGat                                                                                                                              <  7:177420/149‑1 (MQ=255)                       cTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGGCGTACACCTGCATCGAGAACAGCACGCCGGCCAACGTGCTGGCGCtggccggcgtgctgttctcga                                                                                                                            >  8:180536‑M2/1‑127 (MQ=255)                         gAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGAtcatca                                                                                                                         >  8:235748/1‑149 (MQ=255)                               gAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGGACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGcc                                                                                                                   >  4:114518/1‑149 (MQ=255)                               gAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCG‑CAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGcc                                                                                                                   >  4:18037/1‑148 (MQ=255)                                   acCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCG‑CAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATaa                                                                                                              <  3:18037/149‑1 (MQ=255)                                      aGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAgg                                                                                                            <  2:200473/149‑1 (MQ=255)                                       gTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAggg                                                                                                           <  7:235748/149‑1 (MQ=255)                                          ccAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGgcg                                                                                                         >  6:171810/1‑148 (MQ=255)                                             acaccacaccGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAg                                                                                                     >  3:57441/1‑149 (MQ=255)                                                    accGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACg                                                                                                >  1:98343/1‑147 (MQ=255)                                                      cGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAg                                                                                             >  4:210588/1‑148 (MQ=255)                                                               ggACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCgg                                                                                   <  5:171810/149‑1 (MQ=255)                                                                    tAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGaa                                                                              <  3:210588/149‑1 (MQ=255)                                                                          gTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGt                                                                         <  4:57441/148‑1 (MQ=255)                                                                             ggTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGGACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGc                                                                      <  3:114518/148‑1 (MQ=255)                                                                              gTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCCCGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGAGGCGGGCGAACCCGTGGCgg                                                                    >  8:129251/1‑149 (MQ=255)                                                                              gTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCGATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCgg                                                                    >  8:133286/1‑149 (MQ=255)                                                                               tAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGt                                                                   >  4:113793/1‑149 (MQ=255)                                                                                 gggATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTc                                                                  <  3:149775/148‑1 (MQ=255)                                                                                           cGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCgg                                                       <  8:35195/149‑1 (MQ=255)                                                                                              tATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGgtgt                                                    <  3:113793/149‑1 (MQ=255)                                                                                               aTCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGgtg                                                     >  4:155261/1‑147 (MQ=255)                                                                                                      ggTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGtcgtcg                                            <  4:116122/149‑1 (MQ=255)                                                                                                               ccTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAgtcgt                                              >  1:268346/1‑138 (MQ=255)                                                                                                               ccTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAgtcgt                                              <  2:268346/138‑1 (MQ=255)                                                                                                                cTGCATCTAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACAt                                  >  7:260035/1‑149 (MQ=255)                                                                                                                cTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGcaca                                   >  4:941/1‑148 (MQ=255)                                                                                                                cTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGcaca                                   >  8:188510/1‑148 (MQ=255)                                                                                                                      cGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAAc                                                                             >  4:277822/1‑100 (MQ=255)                                                                                                                      cGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAAc                                                                             <  3:277822/100‑1 (MQ=255)                                                                                                                       gagaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAg                           >  7:22510/1‑149 (MQ=255)                                                                                                                       gagaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAg                           >  3:124398/1‑149 (MQ=255)                                                                                                                        agaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGt                          >  5:233703/1‑149 (MQ=255)                                                                                                                           aCAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggc                       >  5:37966/1‑149 (MQ=255)                                                                                                                            cAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggcc                      >  1:284605/1‑149 (MQ=255)                                                                                                                             aGCACGCCGGCCAGCGCCAGCACGTtggccggcgtgctgttctcgatgcaggtgtacgaccgagtgataccggccgaat                                                                                           <  7:79974‑M2/79‑55 (MQ=255)                                                                                                                             aGCACGCCGGCCAGCGCCAGCACGTtggccggcgtgctgttctcgatgcaggtgtacgaccgagtgataccggccgaat                                                                                           >  8:79974‑M2/1‑25 (MQ=255)                                                                                                                               cACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATcgcg                              <  2:250606/138‑1 (MQ=255)                                                                                                                               cACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATcgcg                              >  1:250606/1‑138 (MQ=255)                                                                                                                                aCGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggccgggc                  <  3:941/149‑1 (MQ=255)                                                                                                                                 tggtggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCTCGGTGTAGGCGTCGGTGCGCACATCGCGCAGTggccgggcc                 >  4:166160/5‑149 (MQ=255)                                                                                                                                   ccGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGgccgggccgg               <  2:226963/149‑1 (MQ=255)                                                                                                                                     ggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAg                                                  >  7:7728/1‑112 (MQ=255)                                                                                                                                     ggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAg                                                  <  8:7728/112‑1 (MQ=255)                                                                                                                                      gccagcgccagcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGgcg            <  2:284605/149‑1 (MQ=255)                                                                                                                                             ccagcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAgg     <  6:233703/149‑1 (MQ=255)                                                                                                                                               agcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAGGGc   >  1:3972/1‑149 (MQ=255)                                                                                                                                               agcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAGGGc   >  8:56161/1‑149 (MQ=255)                                                                                                                                                gcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAGGGcc  <  6:37966/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCGCAGCAGGGCC  >  NC_002947/924485‑924776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.