New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 247328444 (0.900)3 (0.060) 3/252 NT 6.2% coding (812/1851 nt) PP_2167 PhoD‑like phosphatase
?NC_002947 = 2473329 48 (1.020)coding (767/1851 nt) PP_2167 PhoD‑like phosphatase

GAGAGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATCGGCTTGCGCTTGCCGCCGAAAAA  >  NC_002947/2473137‑2473432
                                                                                                                                                     |                                                                                                                                                    
gagaGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCt                                                                                                                                                     <  2:155034/149‑1 (MQ=255)
    ggTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGc                                                                                                                                                 <  7:239813/149‑1 (MQ=255)
        ccAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCg                                                                                                                                              <  2:183412/148‑1 (MQ=255)
          aGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCTAAGACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGc                                                                                                                                             >  1:95343/1‑149 (MQ=255)
          aGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTg                                                                                                                                           >  8:80911/1‑149 (MQ=255)
                               cATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatc                                                                                                                      >  2:116152‑M1/1‑117 (MQ=255)
                               cATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGc                                                                                                                      >  6:92519/1‑149 (MQ=255)
                                 tCGTAGATCTTCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTGGGGAAACCCGTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCCTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCt                                                                                                                     <  1:222191/148‑1 (MQ=255)
                                  cGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGc                                                                                                                   >  1:151592/1‑149 (MQ=255)
                                   gAAGATCATCATGCAGGGCAGGTGGGCCATCACCCGCGCCAGCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCTGCGGGAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGc                                                                                                                   <  2:36994/148‑1 (MQ=255)
                                   gAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATCCCCAGGTCCACCAGCTGcc                                                                                                                  <  6:355/149‑1 (MQ=255)
                                     aGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAg                                                                                                                <  3:191782/149‑1 (MQ=255)
                                      gATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAgg                                                                                                               <  4:94137/149‑1 (MQ=255)
                                           tcaGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCAcc                                                                                                          >  5:70542/1‑149 (MQ=255)
                                                cagggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcga                                                                                                     >  3:225418‑M2/1‑145 (MQ=255)
                                                cagggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcga                                                                                                     >  7:80911‑M2/1‑145 (MQ=255)
                                                   ggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacga                                                                                                  <  4:213371‑M1/149‑53 (MQ=255)
                                                    gcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgag                                                                                                 <  1:116152‑M1/149‑54 (MQ=255)
                                                      aggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCacac                                                                                               >  5:157571/1‑149 (MQ=255)
                                                             ccATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCAGCGACCACACCAACAgg                                                                                        <  2:151592/149‑1 (MQ=255)
                                                                  aCCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACAt                                                                                   >  6:158695/1‑149 (MQ=255)
                                                                      gcgcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGcc                                                                               <  5:247069/149‑1 (MQ=255)
                                                                      gcgcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGc                                                                                >  6:247069/1‑148 (MQ=255)
                                                                        gcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTTCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             <  1:225881/149‑1 (MQ=255)
                                                                          cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGGCCACACCAACAGGTACATGGCCATGa                                                                           >  1:7304/1‑149 (MQ=255)
                                                                          cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAAc                                                                                           <  1:129302/133‑1 (MQ=255)
                                                                          cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAAc                                                                                           >  2:129302/1‑133 (MQ=255)
                                                                          cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGa                                                                           <  5:92519/149‑1 (MQ=255)
                                                                             cT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACtt                                                                        >  1:190251/1‑149 (MQ=255)
                                                                             cT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACtt                                                                        >  6:89004/1‑149 (MQ=255)
                                                                              t‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTc                                                                       >  5:2892/1‑149 (MQ=255)
                                                                                  aCCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTc                                                                       <  2:95343/147‑1 (MQ=255)
                                                                                   ccGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    <  5:6566/149‑1 (MQ=255)
                                                                                    cGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  6:23656/1‑148 (MQ=255)
                                                                                    cGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  7:162788/1‑148 (MQ=255)
                                                                                       gaTTGACGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAg                                                                >  3:266371/1‑149 (MQ=255)
                                                                                        aTTGTCGGCAATCCCCTGGATGAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGGCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAg                                                                <  7:229021/148‑1 (MQ=255)
                                                                                          tGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             >  3:211430/1‑133 (MQ=255)
                                                                                          tGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             <  4:211430/133‑1 (MQ=255)
                                                                                               gCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAg                                                        <  5:158695/149‑1 (MQ=255)
                                                                                               gCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAg                                                        >  7:87144/1‑149 (MQ=255)
                                                                                                   aCCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGGCCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAggtgg                                                    <  2:7304/149‑1 (MQ=255)
                                                                                                       cTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGt                                                >  2:177674/1‑149 (MQ=255)
                                                                                                          gATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCgg                                             <  7:219983/149‑1 (MQ=255)
                                                                                                          gATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCg                                              <  5:89004/148‑1 (MQ=255)
                                                                                                                         ttGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACga                                <  8:162788/147‑1 (MQ=255)
                                                                                                                           gCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    <  8:262860/109‑1 (MQ=255)
                                                                                                                           gCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACgag                               <  6:2892/146‑1 (MQ=255)
                                                                                                                           gCTGGTATCGGGCTGGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  7:262860/1‑109 (MQ=255)
                                                                                                                               gTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATc                         <  8:87144/148‑1 (MQ=255)
                                                                                                                               gTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATc                         <  4:266371/148‑1 (MQ=255)
                                                                                                                                              cTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgc         <  1:116152‑M2/149‑97 (MQ=255)
                                                                                                                                               tcgtcgCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgcc        <  4:213371‑M2/149‑98 (MQ=255)
                                                                                                                                                  tcgCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgccctg     >  7:80911‑M1/1‑4 (MQ=255)
                                                                                                                                                  tcgCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgccctg     >  3:225418‑M1/1‑4 (MQ=255)
                                                                                                                                                     cTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTAGATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGATGCTGGACGAGAACATCGGCTTGCGCTTGCCGCCGaaaaa  >  8:172751/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GAGAGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATCGGCTTGCGCTTGCCGCCGAAAAA  >  NC_002947/2473137‑2473432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.