New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2473284	44 (0.900)	3 (0.060)	3/252	NT	6.2%	coding (812/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2473329	48 (1.020)					coding (767/1851 nt)	PP_2167	PhoD‑like phosphatase

GAGAGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATCGGCTTGCGCTTGCCGCCGAAAAA  >  NC_002947/2473137‑2473432                                                                                                                                                      |                                                                                                                                                     gagaGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCt                                                                                                                                                     <  2:155034/149‑1 (MQ=255)     ggTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGc                                                                                                                                                 <  7:239813/149‑1 (MQ=255)         ccAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCg                                                                                                                                              <  2:183412/148‑1 (MQ=255)           aGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCTAAGACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGc                                                                                                                                             >  1:95343/1‑149 (MQ=255)           aGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTg                                                                                                                                           >  8:80911/1‑149 (MQ=255)                                cATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatc                                                                                                                      >  2:116152‑M1/1‑117 (MQ=255)                                cATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGc                                                                                                                      >  6:92519/1‑149 (MQ=255)                                  tCGTAGATCTTCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTGGGGAAACCCGTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCCTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCt                                                                                                                     <  1:222191/148‑1 (MQ=255)                                   cGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGc                                                                                                                   >  1:151592/1‑149 (MQ=255)                                    gAAGATCATCATGCAGGGCAGGTGGGCCATCACCCGCGCCAGCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCTGCGGGAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGc                                                                                                                   <  2:36994/148‑1 (MQ=255)                                    gAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATCCCCAGGTCCACCAGCTGcc                                                                                                                  <  6:355/149‑1 (MQ=255)                                      aGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAg                                                                                                                <  3:191782/149‑1 (MQ=255)                                       gATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAgg                                                                                                               <  4:94137/149‑1 (MQ=255)                                            tcaGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCAcc                                                                                                          >  5:70542/1‑149 (MQ=255)                                                 cagggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcga                                                                                                     >  3:225418‑M2/1‑145 (MQ=255)                                                 cagggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcga                                                                                                     >  7:80911‑M2/1‑145 (MQ=255)                                                    ggcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacga                                                                                                  <  4:213371‑M1/149‑53 (MQ=255)                                                     gcaggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgag                                                                                                 <  1:116152‑M1/149‑54 (MQ=255)                                                       aggTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCacac                                                                                               >  5:157571/1‑149 (MQ=255)                                                              ccATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCAGCGACCACACCAACAgg                                                                                        <  2:151592/149‑1 (MQ=255)                                                                   aCCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACAt                                                                                   >  6:158695/1‑149 (MQ=255)                                                                       gcgcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGcc                                                                               <  5:247069/149‑1 (MQ=255)                                                                       gcgcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGc                                                                                >  6:247069/1‑148 (MQ=255)                                                                         gcCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTTCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             <  1:225881/149‑1 (MQ=255)                                                                           cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGGCCACACCAACAGGTACATGGCCATGa                                                                           >  1:7304/1‑149 (MQ=255)                                                                           cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAAc                                                                                           <  1:129302/133‑1 (MQ=255)                                                                           cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAAc                                                                                           >  2:129302/1‑133 (MQ=255)                                                                           cACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGa                                                                           <  5:92519/149‑1 (MQ=255)                                                                              cT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACtt                                                                        >  1:190251/1‑149 (MQ=255)                                                                              cT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACtt                                                                        >  6:89004/1‑149 (MQ=255)                                                                               t‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTc                                                                       >  5:2892/1‑149 (MQ=255)                                                                                   aCCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTc                                                                       <  2:95343/147‑1 (MQ=255)                                                                                    ccGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    <  5:6566/149‑1 (MQ=255)                                                                                     cGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  6:23656/1‑148 (MQ=255)                                                                                     cGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  7:162788/1‑148 (MQ=255)                                                                                        gaTTGACGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAg                                                                >  3:266371/1‑149 (MQ=255)                                                                                         aTTGTCGGCAATCCCCTGGATGAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGGCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAg                                                                <  7:229021/148‑1 (MQ=255)                                                                                           tGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             >  3:211430/1‑133 (MQ=255)                                                                                           tGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCAt                                                                             <  4:211430/133‑1 (MQ=255)                                                                                                gCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAg                                                        <  5:158695/149‑1 (MQ=255)                                                                                                gCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAg                                                        >  7:87144/1‑149 (MQ=255)                                                                                                    aCCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGGCCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAggtgg                                                    <  2:7304/149‑1 (MQ=255)                                                                                                        cTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGt                                                >  2:177674/1‑149 (MQ=255)                                                                                                           gATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCgg                                             <  7:219983/149‑1 (MQ=255)                                                                                                           gATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCg                                              <  5:89004/148‑1 (MQ=255)                                                                                                                          ttGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACga                                <  8:162788/147‑1 (MQ=255)                                                                                                                            gCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    <  8:262860/109‑1 (MQ=255)                                                                                                                            gCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACgag                               <  6:2892/146‑1 (MQ=255)                                                                                                                            gCTGGTATCGGGCTGGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGc                                                                    >  7:262860/1‑109 (MQ=255)                                                                                                                                gTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATc                         <  8:87144/148‑1 (MQ=255)                                                                                                                                gTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATc                         <  4:266371/148‑1 (MQ=255)                                                                                                                                               cTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgc         <  1:116152‑M2/149‑97 (MQ=255)                                                                                                                                                tcgtcgCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGgcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgcc        <  4:213371‑M2/149‑98 (MQ=255)                                                                                                                                                   tcgCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgccctg     >  7:80911‑M1/1‑4 (MQ=255)                                                                                                                                                   tcgCcggtgccctggcagctggtggacctgggaatccccagcgggctcagcgacgagcatcaagcccgataccagcaagagctgccgctgatccaggggtttgccgacaatctcggtcaggtggcgcgggtgatggcccacctgccctg     >  3:225418‑M1/1‑4 (MQ=255)                                                                                                                                                      cTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTAGATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGATGCTGGACGAGAACATCGGCTTGCGCTTGCCGCCGaaaaa  >  8:172751/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GAGAGGTTCCAGTCGTCCGTGATGTCGTGGTCATCGAAGATCATCAGGCAGGGCAGGTGGGCCATCACCCGCGCCACCT‑‑GACCGAGATTGTCGGCAAACCCCTGGATCAGCGGCAGCTCTTGCTGGTATCGGGCTTGATGCTCGTCGCTGAGCCCGCTGGGGATTCCCAGGTCCACCAGCTGCCAGGGCACCGGCGACCACACCAACAGGTACATGGCCATGACTTCGGCGAAGGTCACCAGGTGGTTGTCGGCGTTGCTGGACGAGAAGATCGGCTTGCGCTTGCCGCCGAAAAA  >  NC_002947/2473137‑2473432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.