New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2555971 =	44 (0.900)	4 (0.090)	4/250	NT	8.4%	intergenic (+71/+140)	PP_2240/PP_2241	ABC transporter permease/ATP‑binding protein/MFS transporter
	?	NC_002947	2556059 =	45 (0.960)					intergenic (+159/+52)	PP_2240/PP_2241	ABC transporter permease/ATP‑binding protein/MFS transporter

GCGTTCCACACCCACCGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGC  >  NC_002947/2555823‑2556120                                                                                                                                                     |                                                                                                                                                       gCGTTCCACACCCACCGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGAc                                                                                                                                                        <  5:177764/149‑1 (MQ=255)  gattgctgtgggagcgtgcagggttccaggccaccttcctggtgggtgcgggttttgccgtcaccacccttgcaggactgacgctgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCa                                                                                                                                                       <  2:218495‑M1/2‑1 (MQ=255)    ttCCACACCCACCGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATc                                                                                                                                                     >  3:89310/1‑149 (MQ=255)     tgctgtgggagcgtgcagggttccaggccaccttcctggtgggtgcgggttttgccgtcaccacccttgcaggactgacgctgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATc                                                                                                                                                     >  7:100823‑M1/145‑148 (MQ=255)         cacccaccGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTAc                                                                                                                                                <  6:24175/149‑1 (MQ=255)              accGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGa                                                                                                                                            >  4:197613/1‑148 (MQ=255)                 ggCTTGAGGTGGATGGGCATGGCGGGTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGGGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGc                                                                                                                                        <  8:183376/149‑1 (MQ=255)                  tgcagggttccaggccaccttcctggtgggtgcgggttttgccgtcaccacccttgcaggactgacgctgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGcc                                                                                                                                       <  2:238845‑M1/18‑1 (MQ=255)                     tGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGc                                                                                                                                        <  8:239196/145‑1 (MQ=255)                     tGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGc                                                                                                                                        >  7:239196/1‑145 (MQ=255)                       aGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCAc                                                                                                                                  >  1:294158/1‑149 (MQ=255)                           ggATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCgg                                                                                                                               >  6:46441/1‑148 (MQ=255)                                 gCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAggcgg                                                                                                                        >  3:27705/1‑149 (MQ=255)                                  accttcctggtgggtgcgggttttgccgtcaccacccttgcaggactgacgctgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCt                                                                                                                                                   >  6:172146‑M1/116‑121 (MQ=255)                                  accttcctggtgggtgcgggttttgccgtcaccacccttgcaggactgacgctgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCt                                                                                                                                                   <  5:172146‑M1/6‑1 (MQ=255)                                       cGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTcc                                                                                                                  <  5:42593/149‑1 (MQ=255)                                        ggTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTccc                                                                                                                 <  4:89310/149‑1 (MQ=255)                                             gTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGTCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTc                                                                                                             <  5:214270/148‑1 (MQ=255)                                                       gAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑Cg                                                                                                  <  4:27705/148‑1 (MQ=255)                                                          cAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTACACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGcat                                                                                              >  8:236587/1‑147 (MQ=255)                                                            ggaggCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCctct                                                                                            >  3:32209/1‑149 (MQ=255)                                                                gCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCCGTCCAGACGTT‑CGGCCTCTgcgg                                                                                        >  8:179423/1‑149 (MQ=255)                                                                    tgCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGAATTGCAGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCggg                                                                                    >  1:15016/1‑149 (MQ=255)                                                                       tGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGc                                                                                 <  7:236587/149‑1 (MQ=255)                                                                            tAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTc                                                                                                             >  8:147025/1‑117 (MQ=255)                                                                            tAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTc                                                                                                             <  7:147025/117‑1 (MQ=255)                                                                              gTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCgg                                                                           <  3:197613/148‑1 (MQ=255)                                                                              gTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCg                                                                            <  2:294158/147‑1 (MQ=255)                                                                                      tgctgcgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGa                                                                  <  5:200266‑M1/86‑1 (MQ=255)                                                                                       gggggTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTcc                                                                                                                  >  4:104104/1‑101 (MQ=255)                                                                                       gggggTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTcc                                                                                                                  <  3:104104/101‑1 (MQ=255)                                                                                         gggTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATg                                                                <  8:166473/148‑1 (MQ=255)                                                                                         gggTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATg                                                                >  7:166473/1‑148 (MQ=255)                                                                                         gggTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTCCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCTGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACatgatg                                                                >  8:100865/1‑148 (MQ=255)                                                                                           gTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGaa                                                             <  7:203900/149‑1 (MQ=255)                                                                                           cgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATgg                                                               >  6:200266‑M1/59‑147 (MQ=255)                                                                                            gctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAAc                                                            >  1:238845‑M1/58‑149 (MQ=255)                                                                                                      aTCCGGCATCGCGATTATCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCTGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCt                                                  <  2:15016/149‑1 (MQ=255)                                                                                                       tCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGTCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTg                                                 >  1:218495/1‑149 (MQ=255)                                                                                                          ggCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACa                                                                     <  3:164384/126‑1 (MQ=255)                                                                                                          ggCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACa                                                                     >  4:164384/1‑126 (MQ=255)                                                                                                           gCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATa                                             >  7:205296/1‑149 (MQ=255)                                                                                                                       gCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTcgc                                 <  4:32209/149‑1 (MQ=255)                                                                                                                            gCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAAc                             <  5:46441/148‑1 (MQ=255)                                                                                                                             ccccTTCACTGCGTGCATCGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCg                           >  2:128610/1‑149 (MQ=255)                                                                                                                              cccTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAAc                                                    >  5:211554/1‑123 (MQ=255)                                                                                                                              cccTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAAc                                                    <  6:211554/123‑1 (MQ=255)                                                                                                                                 ttCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAg                       >  3:197778/1‑149 (MQ=255)                                                                                                                                     cTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CTGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCa                                               <  7:23355/121‑1 (MQ=255)                                                                                                                                     cTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCa                                               >  8:23355/1‑121 (MQ=255)                                                                                                                                           gCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAgg             >  6:251215/1‑149 (MQ=255)                                                                                                                                              ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCGCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGtt           >  1:215718/1‑148 (MQ=255)                                                                                                                                              ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGt                     >  4:157591/1‑138 (MQ=255)                                                                                                                                              ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGt                     <  3:157591/138‑1 (MQ=255)                                                                                                                                                 ccGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgc       >  7:283598/1‑149 (MQ=255)                                                                                                                                                  cGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAg                                                                    >  6:118593/1‑87 (MQ=255)                                                                                                                                                  cGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAg                                                                    <  5:118593/87‑1 (MQ=255)                                                                                                                                                     cATCCTTACTGGCAGCCCTTCCCCGGCCTGCGCGGCACCCTGTCCAG‑CGTTGCGCCCTCTG‑GGGGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCgcagc  <  6:28673/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       GCGTTCCACACCCACCGGCTTGAGGTGGATGGGCATGGCGGTTGGTCGTTACTGGAGCAGGAGGCTGTGCTGGCCTAGTTCGGCTTGGGGGTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGC  >  NC_002947/2555823‑2556120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.