New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2555971 = | 44 (0.900) | 4 (0.090) | 4/250 | NT | 8.4% | intergenic (+71/+140) | PP_2240/PP_2241 | ABC transporter permease/ATP‑binding protein/MFS transporter |
? | NC_002947 | 2556059 = | 45 (0.960) | intergenic (+159/+52) | PP_2240/PP_2241 | ABC transporter permease/ATP‑binding protein/MFS transporter |
GTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTCCCACAGCAATC > NC_002947/2555913‑2556205 | gTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGaa < 7:203900/149‑1 (MQ=255) cgctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATgg > 6:200266‑M1/59‑147 (MQ=255) gctgaacctggctaacctggcggttcgcgactgccgcgtatgcaggttgaacagttcCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAAc > 1:238845‑M1/58‑149 (MQ=255) aTCCGGCATCGCGATTATCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCTGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCt < 2:15016/149‑1 (MQ=255) tCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGTCATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTg > 1:218495/1‑149 (MQ=255) gCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATa > 7:205296/1‑149 (MQ=255) gCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTcgc < 4:32209/149‑1 (MQ=255) gCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAAc < 5:46441/148‑1 (MQ=255) ccccTTCACTGCGTGCATCGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCg > 2:128610/1‑149 (MQ=255) cccTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAAc < 6:211554/123‑1 (MQ=255) cccTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAAc > 5:211554/1‑123 (MQ=255) ttCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAg > 3:197778/1‑149 (MQ=255) cTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CTGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCa < 7:23355/121‑1 (MQ=255) cTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCa > 8:23355/1‑121 (MQ=255) gCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAgg > 6:251215/1‑149 (MQ=255) ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCGCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGtt > 1:215718/1‑148 (MQ=255) ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGt > 4:157591/1‑138 (MQ=255) ttGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGt < 3:157591/138‑1 (MQ=255) ccGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgc > 7:283598/1‑149 (MQ=255) gttccatcctgtaacccggacgcccccgccgcagaggccgaacgtctggacagggagcgccgcctgccggtgaaggcgttcgagtaaggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgc > 1:238845‑M2/93‑149 (MQ=255) ccatcctgtaacccggacgcccccgccgcagaggccgaacgtctggacagggagcgccgcctgccggtgaaggcgttcgagtaaggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgcg > 6:200266‑M2/90‑147 (MQ=255) cATCCTTACTGGCAGCCCTTCCCCGGCCTGCGCGGCACCCTGTCCAG‑CGTTGCGCCCTCTG‑GGGGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCgcagc < 6:28673/149‑1 (MQ=255) tcctgtaacccggacgcccccgccgcagaggccgaacgtctggacagggagcgccgcctgccggtgaaggcgttcgagtaaggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCgcagca < 5:200266‑M2/63‑1 (MQ=255) CTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCagcagc > 8:205296‑M1/1‑149 (MQ=255) CTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCagcagc < 5:268193‑M1/149‑1 (MQ=255) CTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCagcagc < 5:87959‑M1/149‑1 (MQ=255) tCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGc < 6:211497/126‑1 (MQ=255) gAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgcgc > 8:130797/1‑136 (MQ=255) gAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAgcgc < 7:130797/136‑1 (MQ=255) gAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTc > 5:106862/1‑149 (MQ=255) cTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGc > 6:176863/1‑147 (MQ=255) cTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGc > 6:40310/1‑147 (MQ=255) ttCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTa < 5:274462/115‑1 (MQ=255) ttCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTa > 6:274462/1‑115 (MQ=255) ggCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGt > 8:154128/1‑131 (MQ=255) ggCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGt < 7:154128/131‑1 (MQ=255) ggCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGggtggt < 5:176863/149‑1 (MQ=255) aGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGAc > 3:154386/1‑149 (MQ=255) gcggcgCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCTTCCGGGTTACATGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACgg < 7:100865/149‑1 (MQ=255) gcggcgCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACgg < 6:106862/149‑1 (MQ=255) ggcgCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTTCAAGGGTGGTGACGGc > 2:301735/1‑148 (MQ=255) gTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGcac > 1:58750/1‑149 (MQ=255) tCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGcc < 6:162547/94‑1 (MQ=255) tCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGcc > 5:162547/1‑94 (MQ=255) tCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGca < 8:283598/147‑1 (MQ=255) aGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGcacccac < 2:215718/149‑1 (MQ=255) aGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGcacccac > 6:77340/1‑149 (MQ=255) aCGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACccacca < 1:141347/149‑1 (MQ=255) gTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGTACCCACCAgg < 4:197778/149‑1 (MQ=255) tctGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAg < 3:167707/87‑1 (MQ=255) tctGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAg > 4:167707/1‑87 (MQ=255) gcggGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGaa < 5:40310/149‑1 (MQ=255) ggggCGTCCGGGTTACAGGATGGACCTGTTCAACCTGCATACCCGGCAGTCGCGAACCGCCAGGTAAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGCCGGCAAAACCCGCACCACCCAGGAAGGTGGCCTGGCAccc > 2:273528/1‑149 (MQ=255) ggcgttcgagtaaggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCa < 2:238845‑M2/131‑1 (MQ=255) gTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCAc > 8:28824/1‑149 (MQ=255) gTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTccc < 6:268193/149‑1 (MQ=255) aCAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTCCcacc > 5:13237/1‑148 (MQ=255) aggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGt > 6:172146‑M2/7‑121 (MQ=255) aggatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGt < 5:172146‑M2/115‑1 (MQ=255) gatgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTCCCACAGCa > 7:100823‑M2/5‑148 (MQ=255) tgGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTCCCACAGCAATc < 2:218495‑M2/147‑1 (MQ=255) | GTGAGATCGCCATCCGGCATCGCGATTAGCTTGGCCCCTTCACTGCGTGCATTGCCGACATCCTTACTCGAACGCCTTCACCGGCAGGCGGCGCTCCCTGTCCAGACGTT‑CGGCCTCTGCGGCGGGGGCGTCCGGGTTACAGGATGGAACTGTTCAACCTGCATACGCGGCAGTCGCGAACCGCCAGGTTAGCCAGGTTCAGCGCAGCAGCGTCAGTCCTGCAAGGGTGGTGACGGCAAAACCCGCACCCACCAGGAAGGTGGCCTGGAACCCTGCACGCTCCCACAGCAATC > NC_002947/2555913‑2556205 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |