New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2563251	30 (0.610)	4 (0.090)	4/248	NT	10.2%	coding (989/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	= 2563333	42 (0.910)					coding (1071/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase

CCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAAC  >  NC_002947/2563107‑2563394                                                                                                                                                 |                                                                                                                                                ccTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGcc                                                                                                                                             <  2:16910/149‑1 (MQ=255)  cTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGcc                                                                                                                                             >  2:145293/1‑148 (MQ=255)  cTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGcc                                                                                                                                             >  3:92352/1‑148 (MQ=255)   ttGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCacacaa                                                                                                                                           >  6:2194‑M1/1‑143 (MQ=255)          tttACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAgggggg                                                                                                                                     <  2:107366/148‑1 (MQ=255)              caacaTTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATg                                                                                                                                <  6:65382/149‑1 (MQ=255)               aacaTTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATgg                                                                                                                               >  4:83681/1‑149 (MQ=255)                       aGCCATGACCACGCTGGCGATCCCCCGCCCGAGCC‑CACCTGGGCCGGGTTGCGTGCGTTCGTTGCCGACGGCGACGTGGTGATCGGTTTCGATGCGCATGCCCCCGCGGTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTc                                                                                                                      <  4:168798/149‑1 (MQ=255)                         ccATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCg                                                                                                                     <  7:31252/149‑1 (MQ=255)                         ccATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCg                                                                                                                     >  3:46801/1‑149 (MQ=255)                                                 gccCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCacacaacggctggcccagtagcaggtcggcggccaggcgcgaggcgcccgct                                                                                             >  8:238614‑M1/1‑97 (MQ=255)                                                 gccCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGgcc                                                                                             <  3:112797/149‑1 (MQ=255)                                                 gccCGAGCCACACCTGGGCCGGGTTGCGGTCGGTCGGGGCCGCCGGCGACCTGGGGCGCGGGTGCGCTGCGCCGGCCCCCGCGGTGTTCTGGCGGGCGGCCCCGGGGGGCTAGGGCATCCCGTCGGCAGCGGGCGCCTCGCGCCTGgcc                                                                                             <  3:108226/149‑1 (MQ=255)                                                    cGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATg                                                                                                                                <  6:46216/111‑1 (MQ=255)                                                    cGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATg                                                                                                                                >  5:46216/1‑111 (MQ=255)                                                     gAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAggg                                                                                                                                        >  6:128481/1‑102 (MQ=255)                                                          acacCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTg                                                                                    >  8:201660/1‑149 (MQ=255)                                                           cacCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTg                                                                                    >  2:300895/1‑148 (MQ=255)                                                                 gctcGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTgg                                                                             <  6:84297/146‑1 (MQ=255)                                                                  gCCGGGGTGCGAGCGGTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGGTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGGCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTggg                                                                            <  3:229179/149‑1 (MQ=255)                                                                           cgttcgttcgttGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGtt                                                                   <  1:300895/149‑1 (MQ=255)                                                                              tcgttcgttGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTtgtg                                                                >  4:230081/1‑149 (MQ=255)                                                                                       gCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTgccagcc                                                        >  1:145293‑M2/1‑141 (MQ=255)                                                                                        ccGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCacacaacggctggcccagtagcaggtcggcggccaggcgcgaggcgcccgctgccgactggatgccatagcccccctgggccgccagccag                                                      <  5:2194‑M1/149‑92 (MQ=255)                                                                                        ccGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCtt                                                      <  4:46801/149‑1 (MQ=255)                                                                                          gACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCacacaacggctggcccagtagcaggtcggcggccaggcgcgaggcgcccgctgccgactggatgccatagcccccctgggccgccagccagaa                                                    <  7:238614‑M1/149‑94 (MQ=255)                                                                                                  ccTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAgg                                            <  7:201660/149‑1 (MQ=255)                                                                                                   cTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAggg                                           >  4:113652/1‑149 (MQ=255)                                                                                                      gTGATCGGTTGCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGc                                          <  5:139581/147‑1 (MQ=255)                                                                                                             gTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGccc                                 >  4:265856/1‑149 (MQ=255)                                                                                                             gTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGccc                                 >  6:65219/1‑149 (MQ=255)                                                                                                                  gATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAgc                             <  3:83681/148‑1 (MQ=255)                                                                                                                      cgcATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCt                         <  4:92352/148‑1 (MQ=255)                                                                                                                             ccccGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGTGTGGCGCCCGAGCGCCTGTCCCCgg                 >  7:108998/1‑149 (MQ=255)                                                                                                                                  cgTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGt            <  5:65219/149‑1 (MQ=255)                                                                                                                                       ttCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtc       <  7:238614‑M2/149‑57 (MQ=255)                                                                                                                                       ttCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTcc        <  3:265856/148‑1 (MQ=255)                                                                                                                                        tCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAg      >  8:102476/1‑149 (MQ=255)                                                                                                                                         ctggctggCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcgg     <  5:2194‑M2/149‑59 (MQ=255)                                                                                                                                           ggctggcacacaacggctggcccagtagcaggtcggcggccaggcgcgaggcgcccgctgccgactggatgccatagcccccctgggccgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggc    >  1:145293‑M1/1‑7 (MQ=255)                                                                                                                                            gctggcGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAAc  >  2:80395/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                CCTTGGGTATTTACAACATTGAAGCCATGACCACCCTGGCGATCCGCCGCCCGAGCCACACCTGGGCCGGGTTGCGTTCGTTCGTTGCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAGCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAAC  >  NC_002947/2563107‑2563394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.