New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2563251	30 (0.610)	4 (0.090)	4/248	NT	10.2%	coding (989/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	= 2563333	42 (0.910)					coding (1071/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase

GCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGTAAAGGC  >  NC_002947/2563193‑2563476                                                                                                                                              |                                                                                                                                                gCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTgccagcc                                                                                                                                          >  1:145293‑M2/1‑141 (MQ=255)  ccGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCtt                                                                                                                                        <  4:46801/149‑1 (MQ=255)            ccTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAgg                                                                                                                              <  7:201660/149‑1 (MQ=255)             cTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAggg                                                                                                                             >  4:113652/1‑149 (MQ=255)                gTGATCGGTTGCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGc                                                                                                                            <  5:139581/147‑1 (MQ=255)                       gTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGccc                                                                                                                   >  4:265856/1‑149 (MQ=255)                       gTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGccc                                                                                                                   >  6:65219/1‑149 (MQ=255)                            gATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAgc                                                                                                               <  3:83681/148‑1 (MQ=255)                                cgcATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCt                                                                                                           <  4:92352/148‑1 (MQ=255)                                       ccccGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGTGTGGCGCCCGAGCGCCTGTCCCCgg                                                                                                   >  7:108998/1‑149 (MQ=255)                                            cgTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGt                                                                                              <  5:65219/149‑1 (MQ=255)                                                 ttCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtc                                                                                         <  7:238614‑M2/149‑57 (MQ=255)                                                 ttCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTcc                                                                                          <  3:265856/148‑1 (MQ=255)                                                  tCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAg                                                                                        >  8:102476/1‑149 (MQ=255)                                                   ctggctggCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcgg                                                                                       <  5:2194‑M2/149‑59 (MQ=255)                                                      gctggcGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAAc                                                                                    >  2:80395/1‑149 (MQ=255)                                                             gcCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGaaa                                                                             <  5:67737/149‑1 (MQ=255)                                                             gcCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGa                                                                               >  6:211855/1‑147 (MQ=255)                                                              cccAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAg                                                                            >  4:10339/1‑149 (MQ=255)                                                              cccAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAg                                                                            <  7:102476/149‑1 (MQ=255)                                                                cAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGTGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGa                                                                          <  8:108998/149‑1 (MQ=255)                                                                 aGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTc                                                                                           <  6:298216/131‑1 (MQ=255)                                                                 aGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTc                                                                                           >  5:298216/1‑131 (MQ=255)                                                                       gCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATcc                                                                    >  4:274668/1‑148 (MQ=255)                                                                         tATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CAGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAATGAGCATCCCAt                                                                 >  8:230868/1‑149 (MQ=255)                                                                               aTCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCaa                                                           >  5:155346/1‑149 (MQ=255)                                                                                tCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAAt                                                          <  5:211855/149‑1 (MQ=255)                                                                                 ccAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAAt                                                          >  2:119467/1‑148 (MQ=255)                                                                                     tCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAAt                                                          <  4:143425/144‑1 (MQ=255)                                                                                     tCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAAt                                                          >  3:143425/1‑144 (MQ=255)                                                                                          aGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggtgtggctcgggc                                                >  8:238614‑M2/1‑52 (MQ=255)                                                                                              ggCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGttt                                            <  3:274668/149‑1 (MQ=255)                                                                                                cgcCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTcc                                          <  1:119467/149‑1 (MQ=255)                                                                                                   cTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTccc                                         >  3:212232/1‑147 (MQ=255)                                                                                                   cTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTccc                                         >  1:247241/1‑147 (MQ=255)                                                                                                     cgcgCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCcag                                      >  1:221789/1‑148 (MQ=255)                                                                                                          cTGGCCGCCGACCTGCTACTGGGCCAGTCCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCa                                                  >  1:12342/1‑132 (MQ=255)                                                                                                          cTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCa                                                  <  2:12342/131‑1 (MQ=255)                                                                                                           tGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTg                               >  1:287328/1‑149 (MQ=255)                                                                                                                 ccgACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTc                         >  4:276507/1‑149 (MQ=255)                                                                                                                               ggCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCcgcg            <  2:221789/148‑1 (MQ=255)                                                                                                                                gCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCcgcgcg          <  3:113652/149‑1 (MQ=255)                                                                                                                                 ccAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCgg         >  5:144895/1‑149 (MQ=255)                                                                                                                                  cAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGt        <  3:230081/149‑1 (MQ=255)                                                                                                                                    g‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGTa       >  7:287723/1‑148 (MQ=255)                                                                                                                                        gTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGTAAAgg   <  3:276507/149‑1 (MQ=255)                                                                                                                                         ttGTGTgccagccagaaaaacgcgggggcatgcgcatcgaaaccgatcaccaggtcgccgtcggcaacgaacgaacgcaacccggcccaggtgtggctcgggcggcggatcgccagggtggtcatggcttcaatgttgtaaatacccaa  >  6:2194‑M2/1‑6 (MQ=255)                                                                                                                                         ttGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGTAAAGGc  >  2:216359/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                GCCGACGGCGACCTGGTGATCGGTTTCGATGCGCATGCCCCCGCGTTTTTCTGGCTGGCGGCCCAGGGGGGCTATGGCATCCAGTCGGCAGCGGGCGCCTCGCGCCTGGCCGCCGACCTGCTACTGGGCCAG‑CCGTTGTGTGCCAGCCTTGTCAGCCAGGGCGTGGCGCCCGAGCGCCTGTCCCCGGCCCGTTTCCAGCAACCCTGAAAGGAGCATCCCATGAGCAATGACATTCAGCGTTTCCCCAGCAGCCTGCCGTTCCCGTTTTCCCGCGCGGTAAAGGC  >  NC_002947/2563193‑2563476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.