New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2929376 =	41 (0.840)	5 (0.110)	5/250	NT	12.2%	coding (4726/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2929412 =	33 (0.710)					coding (4690/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein

GCGTCTGGCGGGTGAGGCTGATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTC  >  NC_002947/2929229‑2929523                                                                                                                                                    |                                                                                                                                                    gggagcaatggttgacccagcagccgggctgggtcgagtacttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaacctccgagccggtgacatc                                                                                                                                                     >  4:110999‑M1/148‑148 (MQ=255)  ggagcaatggttgacccagcagccgggctgggtcgagtacttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatccc                                                                                                                                                   <  8:159596‑M1/3‑1 (MQ=255)     cTGGCGGGTGAGGCTGATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTgg                                                                                                                                                >  2:86842/1‑149 (MQ=255)                ggCTGATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCtcgt                                                                                                                                     <  3:102663/149‑1 (MQ=255)                 ccagcagccgggctgggtcgagtacttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCtcgtc                                                                                                                                    <  7:12940‑M1/18‑1 (MQ=255)                  cTGATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCtcgtcg                                                                                                                                   >  3:205205/1‑149 (MQ=255)                    gATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCtcgt                                                                                                                                     <  7:273315/145‑1 (MQ=255)                    gATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCtcgt                                                                                                                                     >  8:273315/1‑145 (MQ=255)                    gATCAGCAGACAGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCa                                                                                                                                 >  2:280780/1‑149 (MQ=255)                      tCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCAcc                                                                                                                               >  1:126687/1‑149 (MQ=255)                       cagcagACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCg                                                                                                                              >  6:103454/1‑149 (MQ=255)                        agcagACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCAcc                                                                                                                               >  4:145586/1‑147 (MQ=255)                           agACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCt                                                                                                                          <  1:86842/149‑1 (MQ=255)                           agACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCt                                                                                                                          >  2:84455/1‑149 (MQ=255)                            gACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAGGGCTCGTCGCACCGAGCTg                                                                                                                         >  4:166438/1‑149 (MQ=255)                                  tcgagtacttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAgg                                                                                                                   >  6:306962‑M1/115‑149 (MQ=255)                                    tCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAggg                                                                                                                  <  7:285051/148‑1 (MQ=255)                                    gagtacttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAggg                                                                                                                  >  8:12940‑M1/113‑148 (MQ=255)                                      aaCCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATg                                                                                                               >  8:67430/1‑149 (MQ=255)                                      aaCCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATg                                                                                                               >  3:263680/1‑149 (MQ=255)                                        ccTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAGGGCTCGTCGCACCGAGCTGTCCAGGGATGTc                                                                                                             <  3:166438/149‑1 (MQ=255)                                        ccTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTc                                                                                                             <  7:61267/149‑1 (MQ=255)                                          ttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCAc                                                                                                           <  4:229900‑M1/43‑1 (MQ=255)                                            ctgctgctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCAc                                                                                                           <  1:84455/147‑1 (MQ=255)                                             aaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCgg                                                                                                        >  3:229900‑M1/104‑149 (MQ=255)                                               ctgctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTCGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCt                                                                                                      >  5:122980/1‑149 (MQ=255)                                                 gctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTcg                                                                                                    >  3:108172/1‑149 (MQ=255)                                                       cAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGtt                                                                                              <  4:263680/149‑1 (MQ=255)                                                        aGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGttt                                                                                             <  1:280780/149‑1 (MQ=255)                                                           cAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCAt                                                                                          >  3:270703/1‑149 (MQ=255)                                                                  tCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCa                                                                                   <  2:126687/149‑1 (MQ=255)                                                                   cAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAg                                                                                  >  3:55173/1‑149 (MQ=255)                                                                      cGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCACGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTaa                                                                               >  5:156860/1‑149 (MQ=255)                                                                             gCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATagag                                                                          <  7:67430/147‑1 (MQ=255)                                                                             gCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATagag                                                                          <  4:270703/147‑1 (MQ=255)                                                                                aTACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAAt                                                                     <  4:205205/149‑1 (MQ=255)                                                                                               gAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTggcggc                                                       >  5:173185/1‑148 (MQ=255)                                                                                                   aCTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCaaaa                                                  <  2:261814/149‑1 (MQ=255)                                                                                                                gCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAg                                      <  6:173185/148‑1 (MQ=255)                                                                                                                 ccTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGc                                    <  5:103454/149‑1 (MQ=255)                                                                                                                          aGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTggg                           >  2:11677/1‑149 (MQ=255)                                                                                                                            cATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTTATCAGGAGGAACTGGGcc                         >  8:75152/1‑149 (MQ=255)                                                                                                                                 aCCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATg                    >  8:12430/1‑149 (MQ=255)                                                                                                                                    gggCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGctc                 <  7:12430/149‑1 (MQ=255)                                                                                                                                    gggCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGctc                 >  2:255851/1‑149 (MQ=255)                                                                                                                                       cTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCg              <  6:122980/149‑1 (MQ=255)                                                                                                                                        tttCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGt             >  1:165255/1‑149 (MQ=255)                                                                                                                                              gCATGACCCTGGCCAAGGCTCGGCGCACCGAGGTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAg       <  7:75152/149‑1 (MQ=255)                                                                                                                                                    CCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTc  <  5:296077‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCGTCTGGCGGGTGAGGCTGATCAGCAGACCGGTTTCAACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTC  >  NC_002947/2929229‑2929523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.