New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2929376 =	41 (0.840)	5 (0.110)	5/250	NT	12.2%	coding (4726/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2929412 =	33 (0.710)					coding (4690/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein

AACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTCCCGA  >  NC_002947/2929266‑2929560                                                                                                                                                   |                                                                                                                                                     aaCCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATg                                                                                                                                                    >  8:67430/1‑149 (MQ=255) aaCCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATg                                                                                                                                                    >  3:263680/1‑149 (MQ=255)   ccTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAGGGCTCGTCGCACCGAGCTGTCCAGGGATGTc                                                                                                                                                  <  3:166438/149‑1 (MQ=255)   ccTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTc                                                                                                                                                  <  7:61267/149‑1 (MQ=255)     ttgaaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCAc                                                                                                                                                <  4:229900‑M1/43‑1 (MQ=255)       ctgctgctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCAc                                                                                                                                                <  1:84455/147‑1 (MQ=255)        aaacgagagcatgcggcccagttcagcctgatcaccgacttttggcggccaggccttgattacctctattactgcctagatgaaaccgccgagccggtgacatCCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCgg                                                                                                                                             >  3:229900‑M1/104‑149 (MQ=255)          ctgctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTCGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCt                                                                                                                                           >  5:122980/1‑149 (MQ=255)            gctCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTcg                                                                                                                                         >  3:108172/1‑149 (MQ=255)                  cAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGtt                                                                                                                                   <  4:263680/149‑1 (MQ=255)                   aGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGttt                                                                                                                                  <  1:280780/149‑1 (MQ=255)                      cAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCAt                                                                                                                               >  3:270703/1‑149 (MQ=255)                             tCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCa                                                                                                                        <  2:126687/149‑1 (MQ=255)                              cAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAg                                                                                                                       >  3:55173/1‑149 (MQ=255)                                 cGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCACGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTaa                                                                                                                    >  5:156860/1‑149 (MQ=255)                                        gCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATagag                                                                                                               <  7:67430/147‑1 (MQ=255)                                        gCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATagag                                                                                                               <  4:270703/147‑1 (MQ=255)                                           aTACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAAt                                                                                                          <  4:205205/149‑1 (MQ=255)                                                          gAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTggcggc                                                                                            >  5:173185/1‑148 (MQ=255)                                                              aCTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCaaaa                                                                                       <  2:261814/149‑1 (MQ=255)                                                                           gCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAg                                                                           <  6:173185/148‑1 (MQ=255)                                                                            ccTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGc                                                                         <  5:103454/149‑1 (MQ=255)                                                                                     aGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTggg                                                                >  2:11677/1‑149 (MQ=255)                                                                                       cATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTTATCAGGAGGAACTGGGcc                                                              >  8:75152/1‑149 (MQ=255)                                                                                            aCCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATg                                                         >  8:12430/1‑149 (MQ=255)                                                                                               gggCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGctc                                                      <  7:12430/149‑1 (MQ=255)                                                                                               gggCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGctc                                                      >  2:255851/1‑149 (MQ=255)                                                                                                  cTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCg                                                   <  6:122980/149‑1 (MQ=255)                                                                                                   tttCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGt                                                  >  1:165255/1‑149 (MQ=255)                                                                                                     ccggtgacatccctggacagctcggtgcgacgagccttggccagggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGttt                                                >  3:229900‑M2/47‑149 (MQ=255)                                                                                                        gtgacatccctggacagctcggtgcgacgagccttggccagggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCaa                                             <  4:229900‑M2/106‑1 (MQ=255)                                                                                                         gCATGACCCTGGCCAAGGCTCGGCGCACCGAGGTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAg                                            <  7:75152/149‑1 (MQ=255)                                                                                                               ccctggacagctcggtgcgacgagccttggccagggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTc                                       >  8:12940‑M2/37‑148 (MQ=255)                                                                                                               CCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTc                                       <  5:296077‑M1/148‑1 (MQ=255)                                                                                                                cctggacagctcggtgcgacgagccttggccagggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGa                                     >  6:306962‑M2/36‑149 (MQ=255)                                                                                                                CCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGa                                     <  7:159596‑M1/149‑1 (MQ=255)                                                                                                                CCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGACTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGa                                     <  7:38634‑M1/149‑1 (MQ=255)                                                                                                                     ccAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAg                                >  4:71458/1‑149 (MQ=255)                                                                                                                      cAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTggg                                                                <  6:54512/116‑1 (MQ=255)                                                                                                                      cAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTggg                                                                >  5:54512/1‑116 (MQ=255)                                                                                                                          gCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCgg                           <  6:156860/149‑1 (MQ=255)                                                                                                                                 gacgagccttggccagggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTgg                    <  7:12940‑M2/131‑1 (MQ=255)                                                                                                                                  cACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTggg                   <  4:108172/149‑1 (MQ=255)                                                                                                                                   aCCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGt                  <  6:194849/149‑1 (MQ=255)                                                                                                                                   aCCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGt                  >  4:241254/1‑149 (MQ=255)                                                                                                                                       aGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTgg                    >  6:208956/1‑143 (MQ=255)                                                                                                                                       aGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTgg                    <  5:208956/143‑1 (MQ=255)                                                                                                                                          tGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTgg                                                                 >  5:11961/1‑95 (MQ=255)                                                                                                                                          tGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTgg                                                                 <  6:11961/95‑1 (MQ=255)                                                                                                                                            tCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCAtt          <  4:55173/148‑1 (MQ=255)                                                                                                                                            tCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTg         >  6:110282/1‑149 (MQ=255)                                                                                                                                                gggATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTcc     <  8:159596‑M2/146‑1 (MQ=255)                                                                                                                                                  gATGTCACCGGCTCGGAGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTccc    >  4:110999‑M2/2‑148 (MQ=255)                                                                                                                                                   aTGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTCCCGa  <  1:255851/149‑1 (MQ=255)                                                                                                                                                   aTGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTCCCGa  <  1:11677/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AACCTGCTGCTGCTCGGCAGTCAGCGCGTCAACGCCCTGGCGATACTGCTGCTCGTTGAGCACTACGCGACGTAGCCTGCCGTCAGCATCCACCGGGCTTTCAGGCATGACCCTGGCCAAGGCTCGTCGCACCGAGCTGTCCAGGGATGTCACCGGCTCGGCGGTTTCATCTAGGCAGTAATAGAGGTAATCAAGGCCTGGCCGCCAAAAGTCGGTGATCAGGCTGAACTGGGCCGCATGCTCTCGTTTCAAGTACTCGACCCAGCCCGGCTGCTGGGTCAACCATTGCTCCCGA  >  NC_002947/2929266‑2929560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.