New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3150435	41 (0.840)	4 (0.090)	4/252	NT	10.7%	coding (539/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein
	?	NC_002947	= 3150489	27 (0.570)					coding (593/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein

GCATTGCTGTTCTACGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGCCAGGCCCGCTACCTGCTGGC  >  NC_002947/3150287‑3150582                                                                                                                                                       |                                                                                                                                                       gCATTGCTGTTCTACGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGA                                                                                                                                                        >  5:112680‑M1/1‑149 (MQ=255)          ttCTACGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGAcgcccctcg                                                                                                                                               >  1:171621‑M1/1‑140 (MQ=255)            cTACGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAACGAGGGCCCCCCGAGAACAGCTTACACCGGCGGGATCCAGATGCCCaaa                                                                                                                                                >  1:103033/1‑147 (MQ=255)               cGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTcagc                                                                                                                                          >  3:201017/1‑149 (MQ=255)                    aTGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCAc                                                                                                                                     >  5:170252/1‑149 (MQ=255)                                tGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCAt                                                                                                                         >  4:276788/1‑149 (MQ=255)                                tGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCAt                                                                                                                         >  6:274011/1‑149 (MQ=255)                                 ggCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATg                                                                                                                        >  3:219861/1‑149 (MQ=255)                                      aTTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAg                                                                                                                   <  4:232615/149‑1 (MQ=255)                                      aTTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAg                                                                                                                   <  7:113243/149‑1 (MQ=255)                                                 ccGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATTGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCg                                                                                                         <  1:222084/148‑1 (MQ=255)                                                 ccGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATTGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCg                                                                                                         <  1:217965/148‑1 (MQ=255)                                                  cGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAg                                                                                                       >  2:42408/1‑149 (MQ=255)                                                  cGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAg                                                                                                       <  4:201017/149‑1 (MQ=255)                                                  cGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAg                                                                                                       >  3:90866/1‑149 (MQ=255)                                                      ttACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGc                                                                                                   <  2:201386/149‑1 (MQ=255)                                                               ccTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGAcgcccctcgcccagcacctcggcatggctgagcccgtgctgctgaagttggccatcggcatc                                                                                          <  2:171621‑M1/149‑63 (MQ=255)                                                               ccTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTgg                                                                                          <  3:276788/149‑1 (MQ=255)                                                                cTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAgg                                                                                                      <  1:46375/136‑1 (MQ=255)                                                                cTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAgg                                                                                                      >  2:46375/1‑136 (MQ=255)                                                                    ccGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGaa                                                                                     <  6:112680/149‑1 (MQ=255)                                                                      gcgcAGCCGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACa                                                                                   <  7:92642/149‑1 (MQ=255)                                                                          aGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGt                                                                                         >  3:85731/1‑139 (MQ=255)                                                                          aGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGt                                                                                         <  4:85731/139‑1 (MQ=255)                                                                          aGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTCGTCGACCAggcg                                                                               >  8:258196/1‑147 (MQ=255)                                                                                      cTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGAcgcccctcgcccagcacctcggcatggctgagcccgtgctgctgaagttggccatcggc                                                                                             >  7:290639‑M1/1‑64 (MQ=255)                                                                                      cTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGAcgcccctcgcccagcacctcggcatggctgagcccgtgctgctgaagttggccatcggc                                                                                             <  8:290639‑M1/123‑60 (MQ=255)                                                                                      cTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GAcg‑gc                                                                 <  4:219861/148‑1 (MQ=255)                                                                                           ttGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGcc                                                             >  6:37542/1‑147 (MQ=255)                                                                                             ggCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAg                                                          <  1:42408/148‑1 (MQ=255)                                                                                               cGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGaa                                                       <  2:103033/149‑1 (MQ=255)                                                                                                     aGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGa                                                           >  5:265304/1‑139 (MQ=255)                                                                                                     aGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGa                                                           <  6:265304/139‑1 (MQ=255)                                                                                                      ggCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACg‑gcggc                                                              <  4:201177/135‑1 (MQ=255)                                                                                                      ggCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACg‑gcggc                                                              >  3:201177/1‑135 (MQ=255)                                                                                                            gagcga‑‑gcGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTccc                                          >  7:225237/1‑149 (MQ=255)                                                                                                                ga‑‑gcgCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGAT‑GCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAAc                                     >  6:40813/1‑149 (MQ=255)                                                                                                                      gcCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTc                                  <  5:274011/149‑1 (MQ=255)                                                                                                                        ccAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGc                                >  2:296868/1‑149 (MQ=255)                                                                                                                                  gCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGc                      <  5:37542/149‑1 (MQ=255)                                                                                                                                    tttCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCTGGGAGGTACGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCgg                       >  1:102622/1‑149 (MQ=255)                                                                                                                                         ccGGCTGGATGCCGATGGCCAACTTCAGCGGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGCCAGGccc               >  7:49260/1‑149 (MQ=255)                                                                                                                                          cGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTc                                            >  6:120991/1‑119 (MQ=255)                                                                                                                                          cGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTc                                            <  5:120991/119‑1 (MQ=255)                                                                                                                                              tGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGCCAGGCCCGCTAc          <  3:95041/149‑1 (MQ=255)                                                                                                                                                gATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGtcggcatccagccggtgaaagctgaacgctgggcgctcgctctgcgccttcaccgccaaggcaggatcgggcagctgcgcggccagg           <  2:171621‑M2/149‑88 (MQ=255)                                                                                                                                                  tGCCGATGGCCAACTTCAGAAGCACGGGCTCAGCCATGCCGAGGAGCTGGGCGAGGCGCCTCGGCAGGTCTAACACGAGCGCCT‑‑GACG‑GCCGCCGAGGAAGCCTAGGCCTCCCGCAACTTCGCAACCAGCGGCCAGCACCGCTACctg       >  8:231326/1‑148 (MQ=255)                                                                                                                                                   gCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGtcggcatccagccggtgaaagctgaacgctgggcgctcgctctgcgccttcaccgccaaggcag                                  >  7:290639‑M2/1‑59 (MQ=255)                                                                                                                                                   gCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGtcggcatccagccggtgaaagctgaacgctgggcgctcgctctgcgccttcaccgccaaggcag                                  <  8:290639‑M2/123‑65 (MQ=255)                                                                                                                                                      gATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGCCAGGCCCGCTACCTGCTGgc  <  4:90866/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                       GCATTGCTGTTCTACGCCGATGGCCGTGGCCTGGCGGATTCCGGGTTGCCGAATTACGCTCGCCTGGCCGCGCAGCTGCCCGATCCTGCCTTGGCGGTGAAGGCGCAGAGCGA‑‑GCGCCCAGCGTTCAGCTTTCACCGGCTGGATGCCGATGGCCAACTTCAGCAGCACGGGCTCAGCCATGCCGAGGTGCTGGGCGAGGGGCGTCGGCTGGTCGAACAGGAGCGCCT‑‑GACG‑GCGGCCGAGGAAGCCTTGGCCTCCCGCAACTTCGCCACCAGCGGCCAGGCCCGCTACCTGCTGGC  >  NC_002947/3150287‑3150582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.