New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3238237	29 (0.590)	3 (0.060)	3/250	NT	8.9%	coding (676/1218 nt)	PP_2836	2‑keto‑3‑deoxyxylonate dehydratase
	?	NC_002947	= 3238258	34 (0.730)					coding (697/1218 nt)	PP_2836	2‑keto‑3‑deoxyxylonate dehydratase

CCTGGAGGTGGGTATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGGTTGTTCGACGAAAGCTTCGG  >  NC_002947/3238092‑3238385                                                                                                                                                  |                                                                                                                                                     ccTGGAGGTGGGTATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGCCGAGCAATg                                                                                                                                                   <  4:223584/149‑1 (MQ=255)   tGGAGGTGGGTATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATgg                                                                                                                                                  >  8:142291/1‑148 (MQ=255)        gTGGGTATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCTGGAAGTGGTGCTGGCCGTGTCGAGCAATGgcagca                                                                                                                                             >  2:11696/1‑148 (MQ=255)             tATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAgg                                                                                                                                       >  3:149975/1‑149 (MQ=255)                  gCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCTGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGcc                                                                                                                                  <  1:11696/149‑1 (MQ=255)                    ccGGATGCCGAAGCGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCCCGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCAGCAAGGGCGCCAt                                                                                                                                <  3:219933‑M2/149‑2 (MQ=255)                              aaGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAtggcgcccttgatgctgacattgctcgacacg                                                                                                                      <  7:30194‑M1/149‑33 (MQ=255)                                  gtTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAacgacg                                                                                                                  >  7:114145/1‑149 (MQ=255)                                     cACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAtggcgcccttgatgctgccattgctcgac                                                                                                                         >  7:19221‑M1/1‑110 (MQ=255)                                     cACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAtggcgcccttgatgctgccattgctcgac                                                                                                                         <  8:19221‑M1/139‑30 (MQ=255)                                        cAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCAtg                                                                                                                               >  2:145686‑M2/1‑128 (MQ=255)                                        cAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCAtg                                                                                                                               <  1:145686‑M2/130‑3 (MQ=255)                                                aaCCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGAc                                                                                                    <  4:165905/149‑1 (MQ=255)                                                 aCCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACt                                                                                                   <  4:149975/149‑1 (MQ=255)                                                        tCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCCACCTGCGCGACTTCGAAgg                                                                                            >  1:277077/1‑149 (MQ=255)                                                                   ccACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGt                                                                                 >  4:129126/1‑149 (MQ=255)                                                                    cACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGtt                                                                                >  8:233239/1‑149 (MQ=255)                                                                    cACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGtt                                                                                >  3:264385/1‑149 (MQ=255)                                                                        gcgcCGACATCGGCATCCACCACAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCTTCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGt                                                                                     <  7:173197/140‑1 (MQ=255)                                                                        gcgcCGACAACGGCATCCACCCCAAGTCCAGCTGGAACAACACAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAAAGGCAGCATCAAGCGCGCCAAGCTCCGCAACGACGTCAACCTGCGCCACAACGAAGGGCGTact                                                                                     >  8:173197/1‑138 (MQ=255)                                                                         cgcCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTtgctgc                                                                           <  8:114145/149‑1 (MQ=255)                                                                                aTCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTcc                                                                      >  5:38065/1‑147 (MQ=255)                                                                                      aTCCACCCCAAGTCCAGCTGGAACAACCCAGCGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTccaaggccaa                                                              <  2:277077/149‑1 (MQ=255)                                                                                       tCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTccaaggccaag                                                             <  8:250879/149‑1 (MQ=255)                                                                                          aCCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGa                                                           >  1:12569/1‑148 (MQ=255)                                                                                             ccAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCACCCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGacaac                                                       <  7:142291/149‑1 (MQ=255)                                                                                             ccAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGacaa                                                        >  7:192978/1‑148 (MQ=255)                                                                                                  tCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGc                                                  <  7:233239/149‑1 (MQ=255)                                                                                                      gCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGt                                                                        >  8:268271/1‑123 (MQ=255)                                                                                                      gCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGt                                                                        <  7:268271/123‑1 (MQ=255)                                                                                                                cccTGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTgg                                    >  5:283508/1‑149 (MQ=255)                                                                                                                        cGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCgctg                            <  2:12569/149‑1 (MQ=255)                                                                                                                             gtggtgCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCg                       <  6:38065/149‑1 (MQ=255)                                                                                                                               ggtgCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGgt                     >  7:274550/1‑149 (MQ=255)                                                                                                                                  gCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGgttgt                  <  8:274550/149‑1 (MQ=255)                                                                                                                                   cTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGgttgt                  <  8:192978/148‑1 (MQ=255)                                                                                                                                      gCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGGTTGTTcg               <  3:129126/148‑1 (MQ=255)                                                                                                                                        cGTGTCGAGCAATGTCAGCATCAAGGGCGCCAtgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccgtggccaaccgcggacagcggttgggccttggtgaacactt            <  7:30194‑M2/149‑118 (MQ=255)                                                                                                                                           gtCGAGCAATGGCAGCATCAAGGGCGCCAtgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccgtggccaaccgcggacagcggttgggccttggtg                   >  7:19221‑M2/1‑29 (MQ=255)                                                                                                                                           gtCGAGCAATGGCAGCATCAAGGGCGCCAtgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccgtggccaaccgcggacagcggttgggccttggtg                   <  8:19221‑M2/139‑111 (MQ=255)                                                                                                                                                 cAtggcgcccttgatgctgccattgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccgtggccaaccgcggacagcggttgggccttg                      >  2:145686‑M1/1‑2 (MQ=255)                                                                                                                                                 cAtggcgcccttgatgctgccattgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccgtggccaaccgcggacagcggttgggccttg                      <  1:145686‑M1/130‑129 (MQ=255)                                                                                                                                                 cAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGGTTGTTCGACGAAAGCTTCg   <  6:283508/149‑1 (MQ=255)                                                                                                                                                 cAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGGTTGTTCGACGAAAGCTTCg   >  6:133664/1‑149 (MQ=255)                                                                                                                                                  atggcgcccttgctgctgccattgctcgacacggccagcaccacttccggctctgggttgttccagctggacttggggtggatgccgatgtcggcgccggggccaaccgcggacagcggttgggccttggtgaacgcttcggcatccgg  <  3:219933‑M1/149‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CCTGGAGGTGGGTATCGGCCCGGATGCCGAAGTGTTCACCAAGGCCCAACCGCTGTCCGCGGTTGGCCACGGCGCCGACATCGGCATCCACCCCAAGTCCAGCTGGAACAACCCAGAGCCGGAAGTGGTGCTGGCCGTGTCGAGCAATGGCAGCATCAAGGGCGCCATGCTCGGCAACGACGTCAACCTGCGCGACTTCGAAGGGCGTAGTGCGTTGCTGCTGTCCAAGGCCAAGGACAACAACGCTTCCACTGCACTGGGCCCGCTGCTGCGGTTGTTCGACGAAAGCTTCGG  >  NC_002947/3238092‑3238385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.