New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3271443	43 (0.880)	5 (0.100)	5/260	NT	9.8%	coding (642/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	= 3271466	49 (1.010)					coding (619/1953 nt)	PP_2869	FMN‑binding oxidoreductase

CCAGCGAGGCCGAGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGAC  >  NC_002947/3271295‑3271586                                                                                                                                                     |                                                                                                                                                ccAGCGAGGCCGAGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGGCAGCGCTCATGCGCAGGCCAATGAAGCATTGCTCAACG                                                                                                                                                 >  7:269799‑M1/1‑149 (MQ=255)  cAGCGAGGCCGAGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCgg                                                                                                                                                >  3:114458/1‑149 (MQ=255)           cGAGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCcgcgc                                                                                                                                       <  3:145412/149‑1 (MQ=255)             aGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCgcgcgc                                                                                                                                     <  7:8470/149‑1 (MQ=255)                   cGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCg                                                                                                                               >  3:299027/1‑149 (MQ=255)                     cacaccatatGCAGGTAGTCCAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGc                                                                                                                             <  4:164511/143‑1 (MQ=255)                          gaTATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGgtggccgcagtgcgcgcggccac                                                                                                                          >  8:252107‑M1/1‑124 (MQ=255)                          gaTATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGgtggccgcagtgcgcgcggccac                                                                                                                          <  7:252107‑M1/147‑24 (MQ=255)                                cAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcg                                                                                                                   <  4:114458/148‑1 (MQ=255)                                 aGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcgcg                                                                                                                 >  6:299578/1‑149 (MQ=255)                                  ggTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcgcg                                                                                                                 >  6:232711/1‑148 (MQ=255)                                         gAGCTGGCCCTGCAAGGCCATTGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAAc                                                                                                          <  5:299578/148‑1 (MQ=255)                                         gAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAAcc                                                                                                         >  2:23605/1‑149 (MQ=255)                                           gCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTc                                                                                                       <  8:223994/149‑1 (MQ=255)                                                 ccTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGgcgc                                                                                                 >  7:278235/1‑149 (MQ=255)                                                 ccTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGgcgc                                                                                                 >  6:39546/1‑149 (MQ=255)                                                     cAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTg                                                                                               <  1:23605/147‑1 (MQ=255)                                                         tcactggctGCCGCCAGTGACTCGGCCCAACGCAGGCCCTGCGTGTCGCGCGCGGCCGCGCTGATGCGCAGGCCAATGATGAATTGCTCCTCGctggccgcagtgcgcgcggccaccgatgagcaattcatctttggcctgcgcatca                                                                                          <  8:269799‑M1/144‑56 (MQ=255)                                                            aTGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCcgc                                                                                                                                         <  6:43145/98‑1 (MQ=255)                                                            aTGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCcgc                                                                                                                                         >  5:43145/1‑98 (MQ=255)                                                               gcagcaGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGAGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCAcc                                                                                   >  1:233907/1‑149 (MQ=255)                                                                   cagcCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTACGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTg                                                                               >  8:105656/1‑149 (MQ=255)                                                                     gcCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTa                                                                             <  6:58601/149‑1 (MQ=255)                                                                              tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACt                                                                    >  5:87056/1‑149 (MQ=255)                                                                              tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTACTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACGGTTGTAGCCATCACt                                                                    >  1:245475/1‑149 (MQ=255)                                                                              tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGAAGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCCCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCCCt                                                                    >  8:264895/1‑149 (MQ=255)                                                                                gTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGc                                                                  >  7:214652/1‑149 (MQ=255)                                                                                gTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGc                                                                  <  8:278235/149‑1 (MQ=255)                                                                                   ctcactcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGt                                                                <  5:39546/148‑1 (MQ=255)                                                                                     cactcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACg                                                             >  3:76332/1‑149 (MQ=255)                                                                                      actcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTAc                                                              <  4:299027/147‑1 (MQ=255)                                                                                       ctcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGtt                                                           <  7:129636/149‑1 (MQ=255)                                                                                        tcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGctggccgcagtgcgcgcggccaccga                                                                                                                       <  1:227943‑M1/88‑27 (MQ=255)                                                                                        tcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGctggccgcagtgcgcgcggccaccga                                                                                                                       >  2:227943‑M1/1‑62 (MQ=255)                                                                                          aGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCAc                                                        <  2:233907/149‑1 (MQ=255)                                                                                              ccTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCcgc                                                    >  4:78288/1‑149 (MQ=255)                                                                                               cTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAg                                                                                                     <  3:51818/99‑1 (MQ=255)                                                                                               cTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAg                                                                                                     >  4:51818/1‑99 (MQ=255)                                                                                                 ggCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCggg                                                 >  1:140710/1‑149 (MQ=255)                                                                                                     gTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTga                                             <  2:140710/149‑1 (MQ=255)                                                                                                         cgcTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTACGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGaaa                                         <  7:105656/149‑1 (MQ=255)                                                                                                          gcTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAAc                                        >  1:155081/1‑149 (MQ=255)                                                                                                                cAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGcgcg                                  >  8:276732/1‑149 (MQ=255)                                                                                                                     cTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAg                             <  8:214652/149‑1 (MQ=255)                                                                                                                      tGATGCGCAGGCCAAAGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGcgaggagcaattcatcattggcctgcgcatcagcgcggccgcgcgcgacacgcagggcctgcgttgggccgagtcactggcggcagccagtga                             <  8:269799‑M2/148‑94 (MQ=255)                                                                                                                                gCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCAtggc                  >  5:147497/1‑149 (MQ=255)                                                                                                                                    atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGc                               <  4:216385/132‑1 (MQ=255)                                                                                                                                    atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGc                               >  3:216385/1‑132 (MQ=255)                                                                                                                                    atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCAtggctggc              <  7:276732/149‑1 (MQ=255)                                                                                                                                       atgaATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac           <  5:232711/149‑1 (MQ=255)                                                                                                                                              gCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCg    >  5:150904/1‑149 (MQ=255)                                                                                                                                                  aTCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGAc  <  6:87056/147‑1 (MQ=255)                                                                                                                                                   tCGGTGGCCGCGCGCACTGCGGCCAGcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctga                                                            <  1:227943‑M2/88‑63 (MQ=255)                                                                                                                                                   tCGGTGGCCGCGCGCACTGCGGCCAGcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctga                                                            >  2:227943‑M2/1‑26 (MQ=255)                                                                                                                                                    cGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac           <  5:243994/136‑1 (MQ=255)                                                                                                                                                    cGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTAGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac           >  6:243994/1‑136 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCAGCGAGGCCGAGGTACCGGCGACGATATGCAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGAC  >  NC_002947/3271295‑3271586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.