New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3271443	43 (0.880)	5 (0.100)	5/260	NT	9.8%	coding (642/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	= 3271466	49 (1.010)					coding (619/1953 nt)	PP_2869	FMN‑binding oxidoreductase

CAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGC  >  NC_002947/3271326‑3271612                                                                                                                                             |                                                                                                                                                   cAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcg                                                                                                                                             <  4:114458/148‑1 (MQ=255)  aGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcgcg                                                                                                                                           >  6:299578/1‑149 (MQ=255)   ggTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTcgcg                                                                                                                                           >  6:232711/1‑148 (MQ=255)          gAGCTGGCCCTGCAAGGCCATTGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAAc                                                                                                                                    <  5:299578/148‑1 (MQ=255)          gAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAAcc                                                                                                                                   >  2:23605/1‑149 (MQ=255)            gCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTc                                                                                                                                 <  8:223994/149‑1 (MQ=255)                  ccTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGgcgc                                                                                                                           >  7:278235/1‑149 (MQ=255)                  ccTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGgcgc                                                                                                                           >  6:39546/1‑149 (MQ=255)                      cAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTg                                                                                                                         <  1:23605/147‑1 (MQ=255)                                gcagcaGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGAGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCAcc                                                                                                             >  1:233907/1‑149 (MQ=255)                                    cagcCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTACGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTg                                                                                                         >  8:105656/1‑149 (MQ=255)                                      gcCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTa                                                                                                       <  6:58601/149‑1 (MQ=255)                                               tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACt                                                                                              >  5:87056/1‑149 (MQ=255)                                               tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTACTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACGGTTGTAGCCATCACt                                                                                              >  1:245475/1‑149 (MQ=255)                                               tCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGAAGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCCCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCCCt                                                                                              >  8:264895/1‑149 (MQ=255)                                                 gTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGc                                                                                            <  8:278235/149‑1 (MQ=255)                                                 gTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGc                                                                                            >  7:214652/1‑149 (MQ=255)                                                    ctcactcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGt                                                                                          <  5:39546/148‑1 (MQ=255)                                                      cactcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACg                                                                                       >  3:76332/1‑149 (MQ=255)                                                       actcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTAc                                                                                        <  4:299027/147‑1 (MQ=255)                                                        ctcaGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGtt                                                                                     <  7:129636/149‑1 (MQ=255)                                                           aGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCAc                                                                                  <  2:233907/149‑1 (MQ=255)                                                               ccTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCcgc                                                                              >  4:78288/1‑149 (MQ=255)                                                                cTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAg                                                                                                                               <  3:51818/99‑1 (MQ=255)                                                                cTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAg                                                                                                                               >  4:51818/1‑99 (MQ=255)                                                                  ggCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCggg                                                                           >  1:140710/1‑149 (MQ=255)                                                                      gTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTga                                                                       <  2:140710/149‑1 (MQ=255)                                                                          cgcTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTACGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGaaa                                                                   <  7:105656/149‑1 (MQ=255)                                                                           gcTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAAc                                                                  >  1:155081/1‑149 (MQ=255)                                                                                 cAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGcgcg                                                            >  8:276732/1‑149 (MQ=255)                                                                                      cTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAg                                                       <  8:214652/149‑1 (MQ=255)                                                                                       tGATGCGCAGGCCAAAGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGcgaggagcaattcatcattggcctgcgcatcagcgcggccgcgcgcgacacgcagggcctgcgttgggccgagtcactggcggcagccagtga                                                       <  8:269799‑M2/148‑94 (MQ=255)                                                                                                 gCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCAtggc                                            >  5:147497/1‑149 (MQ=255)                                                                                                     atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGc                                                         <  4:216385/132‑1 (MQ=255)                                                                                                     atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGc                                                         >  3:216385/1‑132 (MQ=255)                                                                                                     atgatgAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCAtggctggc                                        <  7:276732/149‑1 (MQ=255)                                                                                                        atgaATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac                                     <  5:232711/149‑1 (MQ=255)                                                                                                               gCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCg                              >  5:150904/1‑149 (MQ=255)                                                                                                                   aTCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGAc                            <  6:87056/147‑1 (MQ=255)                                                                                                                    tCGGTGGCCGCGCGCACTGCGGCCAGcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctga                                                                                      >  2:227943‑M2/1‑26 (MQ=255)                                                                                                                    tCGGTGGCCGCGCGCACTGCGGCCAGcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctga                                                                                      <  1:227943‑M2/88‑63 (MQ=255)                                                                                                                     cGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac                                     <  5:243994/136‑1 (MQ=255)                                                                                                                     cGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTAGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGccac                                     >  6:243994/1‑136 (MQ=255)                                                                                                                       gTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATc                      >  8:86752/1‑149 (MQ=255)                                                                                                                       gTGGCCGCGCGCACTGCGGCCACcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctgagtgaggacgagtcactggctgctgccatggccttgcagggccagctcgactacctgcatatc                        <  7:252107‑M2/147‑125 (MQ=255)                                                                                                                       gTGGCCGCGCGCACTGCGGCCACcgatgagcaattcatcattggcctgcgcatcagcgctgacgagcgcgacagccagggcctgagtgaggacgagtcactggctgctgccatggccttgcagggccagctcgactacctgcatatc                        >  8:252107‑M2/1‑23 (MQ=255)                                                                                                                        tGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCTCCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATcc                     <  4:76332/149‑1 (MQ=255)                                                                                                                             gcgcgcACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAgg                                                      <  7:161906/111‑1 (MQ=255)                                                                                                                             gcgcgcACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAgg                                                      >  8:161906/1‑111 (MQ=255)                                                                                                                             gcgcgcACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAggcc                >  1:153258/1‑149 (MQ=255)                                                                                                                                cgcACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAggccggc             >  6:212367/1‑149 (MQ=255)                                                                                                                                  cACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCt           >  8:94217/1‑149 (MQ=255)                                                                                                                                   aCTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGTCATCCAGGCCGGCCTg          <  2:245475/149‑1 (MQ=255)                                                                                                                                   aCTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTg          >  4:103219/1‑149 (MQ=255)                                                                                                                                          ccAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAgg   >  6:303531/1‑149 (MQ=255)                                                                                                                                           cAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAggc  <  5:212367/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   CAGGTAGTCGAGCTGGCCCTGCAAGGCCATGGCAGCAGCCAGTGACTCGTCCTCACTCAGGCCCTGGCTGTCGCGCTCGTCAGCGCTGATGCGCAGGCCAATGATGAATTGCTCATCGGTGGCCGCGCGCACTGCGGCCAGCACTTCGCGCAAGAACCTCAGGCGCTGATCCAGGTCACCGTTGTAGCCATCACTGCGTACGTTCACCCGCGGGTTGAGAAACTGCGCGGGCAGGTAGCCATGGCTGGCCACCACCTCGACGCCATCCAGGCCGGCCTGGTGCAGGC  >  NC_002947/3271326‑3271612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.