New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3423583 =	46 (0.940)	3 (0.060)	3/252	NT	6.2%	coding (1741/2211 nt)	PP_3038	TraC domain‑containing protein
	?	NC_002947	3423625 =	46 (0.980)					coding (1783/2211 nt)	PP_3038	TraC domain‑containing protein

AGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAG  >  NC_002947/3423436‑3423723                                                                                                                                                    |                                                                                                                                             atctaccacgaagcgctcttcctgctctgcagtgaacagttcttcctcctcacgggtcacccaccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgacgcaatgcttcaaggtccaccttGa                                                                                                                                             <  8:289218‑M1/2‑1 (MQ=255) aGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGa                                                                                                                                             >  6:291389/1‑149 (MQ=255)  gCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGAc                                                                                                                                            <  6:91027/149‑1 (MQ=255)    ttCAACAAGGCAGGGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAAGACCTTAAGGACGc                                                                                                                                          >  6:232556/1‑149 (MQ=255)    ttCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGc                                                                                                                                          >  8:201613/1‑149 (MQ=255)    ttCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGc                                                                                                                                          >  7:170007/1‑149 (MQ=255)       aacaaGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCAc                                                                                                                                       >  6:69501/1‑149 (MQ=255)           aGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCCCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCgg                                                                                                                                    >  3:256705/1‑148 (MQ=255)                      aCCAAGGCCAAGCAATTCTTCTCGGCATCCATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTa                                                                                                                        <  5:52861/149‑1 (MQ=255)                        cAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTAtt                                                                                                                      >  2:125879/1‑149 (MQ=255)                        cAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTAtt                                                                                                                      >  6:67001/1‑149 (MQ=255)                        cAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTAtt                                                                                                                      <  3:50235/149‑1 (MQ=255)                                  cAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCAAGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATTAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGc                                                                                                            <  6:92551/149‑1 (MQ=255)                                    aTTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCtt                                                                                                          <  2:182845/149‑1 (MQ=255)                                         tctcGGCATCTATCGACACTTACCGCAAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGt                                                                                                      >  1:7053/1‑148 (MQ=255)                                             cctcctcacgggtcacccaccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgacgcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAg                                                                                                  >  4:36902‑M1/104‑148 (MQ=255)                                              gCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCt                                                                                                           >  1:241210/1‑138 (MQ=255)                                              gCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCt                                                                                                           <  2:241210/138‑1 (MQ=255)                                                aTCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTg                                                                                               >  2:247378/1‑148 (MQ=255)                                                  cTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                            >  1:55925/1‑149 (MQ=255)                                                    aTCGACACTTACCGAGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGATATTGGCCTGTCGCTTGCGTCAAGGTGGACCt                                                                                          >  3:95471/1‑149 (MQ=255)                                                     tCGACACTTACCGCGAAAGCTTTGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATTAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                            <  8:205830/146‑1 (MQ=255)                                                     tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                            <  5:67001/146‑1 (MQ=255)                                                     tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCtt                                                                                         >  2:40811/1‑149 (MQ=255)                                                      cGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCtt                                                                                         >  7:18600/1‑148 (MQ=255)                                                       gACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTg                                                                                        <  5:291389/148‑1 (MQ=255)                                                        acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa                                                                                      <  1:247378/149‑1 (MQ=255)                                                            ttACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCAt                                                                                  >  3:84829/1‑149 (MQ=255)                                                            ttACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCAt                                                                                  >  8:280801/1‑149 (MQ=255)                                                              caccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgactcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGt                                                                                                >  8:78576‑M1/87‑133 (MQ=255)                                                              caccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgacgcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGt                                                                                                <  7:78576‑M1/47‑1 (MQ=255)                                                              aCCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCTTCAAGGTCCACCTTGACGCaa                                                                                  <  7:201613/147‑2 (MQ=255)                                                                cgcgAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCg                                                                              <  7:108945/149‑1 (MQ=255)                                                                  cgAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTc                                                                            <  7:280801/149‑1 (MQ=255)                                                                         tATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCg                                                                     >  8:218781/1‑149 (MQ=255)                                                                           tGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTg                                                                   <  8:18600/149‑1 (MQ=255)                                                                           tGGGCGAAGAACGAGTGACGTGCCACGGCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGt                                                                    <  5:232556/148‑1 (MQ=255)                                                                                     aCGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCtgt                                                          <  4:256705/148‑1 (MQ=255)                                                                                        actGACGTGGCACGTCAGTGTGGTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGc                                                      >  8:2905/3‑149 (MQ=255)                                                                                             cGTGCCTCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAgg                                                 <  6:28994/149‑1 (MQ=255)                                                                                             cGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAgg                                                 <  8:175312/149‑1 (MQ=255)                                                                                                 ccACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCAt                                             <  8:170007/149‑1 (MQ=255)                                                                                                      tCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCt                                        <  2:55925/149‑1 (MQ=255)                                                                                                         gtgtgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGc                                      >  3:40224/1‑148 (MQ=255)                                                                                                            tgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTAc                                   <  5:69501/148‑1 (MQ=255)                                                                                                              ttttCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                 <  2:7053/148‑1 (MQ=255)                                                                                                              ttttCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                 <  7:218781/148‑1 (MQ=255)                                                                                                                      ggTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGa                        >  1:112368/1‑149 (MQ=255)                                                                                                                            accaaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                 <  2:4597/134‑1 (MQ=255)                                                                                                                            accaaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                 >  1:4597/1‑134 (MQ=255)                                                                                                                                 ccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTggtggg             >  5:182273/1‑149 (MQ=255)                                                                                                                                     gATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGAc         <  1:125879/149‑1 (MQ=255)                                                                                                                                            aCCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag  >  2:216912/1‑149 (MQ=255)                                                                                                                                             ccTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag  <  7:2905/148‑1 (MQ=255)                                                                                                                                              cTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag  >  7:289218/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                             AGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAG  >  NC_002947/3423436‑3423723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.