New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3423583 =	46 (0.940)	3 (0.060)	3/252	NT	6.2%	coding (1741/2211 nt)	PP_3038	TraC domain‑containing protein
	?	NC_002947	3423625 =	46 (0.980)					coding (1783/2211 nt)	PP_3038	TraC domain‑containing protein

GGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAGCGCTTCGTGGTAGAT  >  NC_002947/3423480‑3423771                                                                                                                                                  |                                                                                                                                                   cctcctcacgggtcacccaccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgacgcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAg                                                                                                                                                  >  4:36902‑M1/104‑148 (MQ=255)    aTCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTg                                                                                                                                               >  2:247378/1‑148 (MQ=255)      cTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                                                                            >  1:55925/1‑149 (MQ=255)        aTCGACACTTACCGAGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGATATTGGCCTGTCGCTTGCGTCAAGGTGGACCt                                                                                                                                          >  3:95471/1‑149 (MQ=255)         tCGACACTTACCGCGAAAGCTTTGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATTAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                                                                            <  8:205830/146‑1 (MQ=255)         tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc                                                                                                                                            <  5:67001/146‑1 (MQ=255)         tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCtt                                                                                                                                         >  2:40811/1‑149 (MQ=255)          cGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCtt                                                                                                                                         >  7:18600/1‑148 (MQ=255)           gACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTg                                                                                                                                        <  5:291389/148‑1 (MQ=255)            acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa                                                                                                                                      <  1:247378/149‑1 (MQ=255)                ttACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCAt                                                                                                                                  >  8:280801/1‑149 (MQ=255)                ttACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCAt                                                                                                                                  >  3:84829/1‑149 (MQ=255)                  caccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgactcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGt                                                                                                                                                >  8:78576‑M1/87‑133 (MQ=255)                  caccagatatcaccggcctggtagcagaacatggcctcagcccacagctggtcacgagcgcgacgcaatgcttcaaggtccaccttGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGt                                                                                                                                                <  7:78576‑M1/47‑1 (MQ=255)                  aCCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCTTCAAGGTCCACCTTGACGCaa                                                                                                                                  <  7:201613/147‑2 (MQ=255)                    cgcgAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCg                                                                                                                              <  7:108945/149‑1 (MQ=255)                      cgAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTc                                                                                                                            <  7:280801/149‑1 (MQ=255)                             tATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCg                                                                                                                     >  8:218781/1‑149 (MQ=255)                               tGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTg                                                                                                                   <  8:18600/149‑1 (MQ=255)                               tGGGCGAAGAACGAGTGACGTGCCACGGCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGt                                                                                                                    <  5:232556/148‑1 (MQ=255)                                         aCGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCtgt                                                                                                          <  4:256705/148‑1 (MQ=255)                                            actGACGTGGCACGTCAGTGTGGTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGc                                                                                                      >  8:2905/3‑149 (MQ=255)                                                 cGTGCCTCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAgg                                                                                                 <  6:28994/149‑1 (MQ=255)                                                 cGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAgg                                                                                                 <  8:175312/149‑1 (MQ=255)                                                     ccACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCAt                                                                                             <  8:170007/149‑1 (MQ=255)                                                          tCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCt                                                                                        <  2:55925/149‑1 (MQ=255)                                                             gtgtgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGc                                                                                      >  3:40224/1‑148 (MQ=255)                                                                tgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTAc                                                                                   <  5:69501/148‑1 (MQ=255)                                                                  ttttCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                                                                 <  7:218781/148‑1 (MQ=255)                                                                  ttttCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                                                                 <  2:7053/148‑1 (MQ=255)                                                                          ggTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGa                                                                        >  1:112368/1‑149 (MQ=255)                                                                                accaaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                                                                 <  2:4597/134‑1 (MQ=255)                                                                                accaaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCa                                                                                 >  1:4597/1‑134 (MQ=255)                                                                                     ccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTggtggg                                                             >  5:182273/1‑149 (MQ=255)                                                                                         gATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGAc                                                         <  1:125879/149‑1 (MQ=255)                                                                                                aCCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag                                                  >  2:216912/1‑149 (MQ=255)                                                                                                 ccTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag                                                  <  7:2905/148‑1 (MQ=255)                                                                                                  cTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTgag                                                  >  7:289218/1‑147 (MQ=255)                                                                                                   accttgacgcaagcgaccggccaataacgccggttaccggtggcgtcAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtggtg                                                               <  7:78576‑M2/86‑1 (MQ=255)                                                                                                   accttgacgcaagcgaccggccaataacgccggttaccggtggcgtcAAGGTGGACCTTGAAGCATTGAGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtggtg                                                               >  8:78576‑M2/48‑133 (MQ=255)                                                                                                     cttgacgcaagcgaccggccaataacgccggttaccggtggcgtcAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGaggagg                                              >  4:36902‑M2/46‑148 (MQ=255)                                                                                                         ACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGgaagaa                                         >  4:40224‑M1/1‑149 (MQ=255)                                                                                                         ACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGgaaga                                          <  3:179562‑M1/148‑1 (MQ=255)                                                                                                             cACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGt                                     >  6:15028/1‑149 (MQ=255)                                                                                                              aCCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGtt                                    <  1:40811/149‑1 (MQ=255)                                                                                                                   tAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCAAGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTg                               >  1:245604/1‑149 (MQ=255)                                                                                                                       cGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCa                             >  4:258137/1‑147 (MQ=255)                                                                                                                        ngCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGgaagaa                                         >  2:273624/2‑134 (MQ=255)                                                                                                                        ggCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGgaagaa                                         <  1:273624/134‑1 (MQ=255)                                                                                                                            ttATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAgg                      <  4:179562/149‑1 (MQ=255)                                                                                                                                  gCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGCCCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGACCTGTTCACTGCAGAGCAGGAagagg                >  7:260502/1‑148 (MQ=255)                                                                                                                                   ccGGTCGATTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGGTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGTTGATATCTGGTGGGTGACCCGTGAGGAGGAATAACTGTTCACTGCAGAGCATGAAGAgcg               <  4:95471/149‑1 (MQ=255)                                                                                                                                    cGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAgcgc              <  3:258137/149‑1 (MQ=255)                                                                                                                                    cGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAgcgc              >  5:222179/1‑149 (MQ=255)                                                                                                                                          cTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAGCGCTTCGTg        <  2:112368/149‑1 (MQ=255)                                                                                                                                                tcAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAGCGCTTCGTGGTAGAt  <  8:289218‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGTGACCCGTGAGGAGGAAGAACTGTTCACTGCAGAGCAGGAAGAGCGCTTCGTGGTAGAT  >  NC_002947/3423480‑3423771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.