New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3444544 =	41 (0.840)	3 (0.060)	3/254	NT	7.3%	coding (24/846 nt)	gpU	tail formation protein
	?	NC_002947	3444599 =	37 (0.780)					coding (79/846 nt)	gpU	tail formation protein

AAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCTGAGATG  >  NC_002947/3444397‑3444688                                                                                                                                                    |                                                                                                                                                 cccgacacgggcttgcgcaacgccgatgctgcgcaccaagcggcccgccttggcgcccatctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccgt                                                                                                                                                 <  4:204359‑M1/2‑1 (MQ=255) cccgacacgggcttgcgcaacgccgatgctgcgcaccaagcggcccgccttggcgcccatctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccgt                                                                                                                                                 <  6:34204‑M1/2‑1 (MQ=255)  aaCCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAgtc                                                                                                                                                >  4:124769/1‑149 (MQ=255)                 gAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCt                                                                                                                                 <  5:32041/149‑1 (MQ=255)                   aaTGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTgg                                                                                                                               <  6:128257/149‑1 (MQ=255)                       gCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTg                                                                                                                            >  5:285962/1‑148 (MQ=255)                         aaaCGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCATGGTTGCAg                                                                                                                         >  5:118213/1‑149 (MQ=255)                                   cgcgGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgc                                                                                                               >  7:207008/1‑149 (MQ=255)                                   accaagcggcccgccttggcgcccatctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccg                                                                                                                                                  >  6:889‑M1/114‑114 (MQ=255)                                   accaagcggcccgccttggcgcccatctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccg                                                                                                                                                  <  5:889‑M1/1‑1 (MQ=255)                                      gggCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccgg                                                                                                            >  7:227401/1‑149 (MQ=255)                                       ggCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccggc                                                                                                           <  4:76187/149‑1 (MQ=255)                                          tGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccggccg                                                                                                         >  4:213890/1‑148 (MQ=255)                                          tGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAgccggccg                                                                                                         >  4:217954/1‑148 (MQ=255)                                            tttGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGaa                                                                                                                 <  1:304407/138‑1 (MQ=255)                                            tttGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGaa                                                                                                                 >  2:304407/1‑138 (MQ=255)                                              tGACGCCTGGCAGCGCGAGGTGGCTGCTCGCACGTCATAGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGTCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGaaa                                                                                                     <  8:227401/148‑1 (MQ=255)                                              tGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGaaa                                                                                                     <  3:124174/148‑1 (MQ=255)                                                  gCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCa                                                                                                                          >  4:89581/1‑123 (MQ=255)                                                  gCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCa                                                                                                                          <  3:89581/123‑1 (MQ=255)                                                  gCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGgcgc                                                                                                <  5:92082/149‑1 (MQ=255)                                                       gCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGa                                                                                             <  8:80083/147‑1 (MQ=255)                                                           atctcaggcggtagaaacgggatgctttccagttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCAt                                                                                       >  3:101609‑M1/90‑149 (MQ=255)                                                              gAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                           <  1:294582/142‑1 (MQ=255)                                                              gAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                           >  2:294582/1‑142 (MQ=255)                                                              gAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCt                                                                                    <  8:207008/149‑1 (MQ=255)                                                                    gCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTAcc                                                                              <  6:118213/149‑1 (MQ=255)                                                                              cGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGgc                                                                    >  3:265800/1‑149 (MQ=255)                                                                                  cTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTg                                                                                   <  6:49444/130‑1 (MQ=255)                                                                                  cTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTg                                                                                   >  5:49444/1‑130 (MQ=255)                                                                                      gcgcAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATcag                                                            <  3:217954/149‑1 (MQ=255)                                                                                      gcgcAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATcag                                                            <  3:213890/149‑1 (MQ=255)                                                                                          aGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATcagcag                                                         >  2:37994/1‑148 (MQ=255)                                                                                           ttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                           >  1:185672‑M1/58‑113 (MQ=255)                                                                                           ttcggacgcagcaccggtaatgctgctgatagcgccgttgagcggtaccagcatgccGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACg                                                                                           <  2:185672‑M1/56‑1 (MQ=255)                                                                                                    tCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGtg                                              >  1:303086/1‑149 (MQ=255)                                                                                                           cACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTc                                       >  2:140760/1‑149 (MQ=255)                                                                                                              gTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCg                                     >  4:153877/1‑148 (MQ=255)                                                                                                              gTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCg                                     >  1:202380/1‑148 (MQ=255)                                                                                                               tttAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGaa                                   <  3:19628/149‑1 (MQ=255)                                                                                                                ttAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAAc                                  >  1:298745/1‑149 (MQ=255)                                                                                                                   aggaggGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTg                                <  3:124769/148‑1 (MQ=255)                                                                                                                      aggGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGaaa                            <  4:265800/149‑1 (MQ=255)                                                                                                                      aggGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGaaa                            <  2:298745/149‑1 (MQ=255)                                                                                                                           cTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATc                       <  2:303086/149‑1 (MQ=255)                                                                                                                                gCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGtt                  >  3:204359/1‑149 (MQ=255)                                                                                                                                gCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGt                   <  2:202380/148‑1 (MQ=255)                                                                                                                                            ctgctgGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCTga      <  7:125760/149‑1 (MQ=255)                                                                                                                                              gctgGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCt        >  5:108864/1‑145 (MQ=255)                                                                                                                                                tgGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCTGAGATg  >  6:15824/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 AAACCAATTGCTGAACGAAATGGCAAACGGTATGCGCGGGCTGTTTGACGCCTGGCAGCGCGAGGTGGCTGCGCGCACGTCCTCGGCGCAGCTGTTCGATCAACCCCACGTTTAAGGAGGGCCTATGGCCTACATGGAACTGCTGGAGTCGTCACTTTCCAGCCTGGTTGCAGCGGGGGAAGCCGGCCGGAAAGGCGCCGACGGCATGCTGGTACCGCTCAACGGCGCTATCAGCAGCATTACCGGTGCTGCGTCCGAACTGGAAAGCATCCCGTTTCTACCGCCTGAGATG  >  NC_002947/3444397‑3444688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.