New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3555318 =	31 (0.630)	3 (0.060)	3/248	NT	9.2%	coding (934/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	3555365 =	30 (0.650)					coding (981/1203 nt)	PP_3139	group 1 family glycosyl transferase

TGCGCGAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACT  >  NC_002947/3555172‑3555462                                                                                                                                                   |                                                                                                                                                 tgagcgAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTg                                                                                                                                                <  8:153249/146‑1 (MQ=255)  gcgcGAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTgg                                                                                                                                               >  5:286090/1‑149 (MQ=255)   cgcgAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTgg                                                                                                                                               <  2:103435/148‑1 (MQ=255)    ccacctcgcccatgcgctgcagtacctcggccggttgcgccaggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacatagGTGGtc                                                                                                                                             >  1:32515‑M1/144‑149 (MQ=255)      gAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTg                                                                                                                                                <  8:152252/144‑1 (MQ=255)      gAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTg                                                                                                                                                >  7:152252/1‑144 (MQ=255)                      gcagtacctcggccggttgcgccaggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacataggtggt                                                                                                                                              <  8:217514‑M1/5‑1 (MQ=255)                      gcagtacctcggccggttgcgccaggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacataggtggt                                                                                                                                              >  7:217514‑M1/126‑130 (MQ=255)                            cccGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGCGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTgcgc                                                                                                                     >  3:8491/1‑149 (MQ=255)                             ccGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGcc                                                                                                                    >  1:225011/1‑149 (MQ=255)                             ccGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGcc                                                                                                                    >  2:256724/1‑149 (MQ=255)                                gCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGc                                                                                                                 <  4:109150/149‑1 (MQ=255)                                     gCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTg                                                                                                            <  6:286090/149‑1 (MQ=255)                                          gccaggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacatagGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGac                                                                                                       <  3:287235‑M1/44‑1 (MQ=255)                                            caggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacatagGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGacca                                                                                                     >  4:287235‑M1/104‑149 (MQ=255)                                              ggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacatagGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGaccacc                                                                                                   >  5:30359‑M1/102‑149 (MQ=255)                                              agcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGa                                                                                                        <  5:286845/144‑1 (MQ=255)                                              agcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGa                                                                                                        >  6:286845/1‑144 (MQ=255)                                               gcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCt                                                                                                  <  6:124560/149‑1 (MQ=255)                                                   gTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATg                                                                                               >  4:153985/1‑148 (MQ=255)                                                      cGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGc                                                                                           <  5:7204/149‑1 (MQ=255)                                                      cGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGc                                                                                           >  8:117207/1‑149 (MQ=255)                                                       gTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCg                                                                                          <  1:270270/149‑1 (MQ=255)                                                        tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                         <  7:117207/149‑1 (MQ=255)                                                                    gATGAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                               <  7:60539/147‑1 (MQ=255)                                                                        agcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCATCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTATCGGGTATCCCCGAGCTGGt                                                                         <  6:137175/149‑1 (MQ=255)                                                                        agcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGt                                                                         >  2:172164/1‑149 (MQ=255)                                                                                  aGGTACGCGAGGAAATCCTGGCCGCCCGCGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGc                                                               <  4:8491/149‑1 (MQ=255)                                                                                             gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctg                                                    >  3:213908/1‑149 (MQ=255)                                                                                                aTCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctggct                                                 >  3:77103/1‑149 (MQ=255)                                                                                                       ccgccCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTcc                                            >  8:17416/1‑147 (MQ=255)                                                                                                                cgcTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGc                                  <  3:153985/148‑1 (MQ=255)                                                                                                                   tGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTg                              >  6:177629/1‑149 (MQ=255)                                                                                                                     gTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATGATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTg                              <  7:292622/147‑1 (MQ=255)                                                                                                                       gCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGAc                           >  5:209574/1‑148 (MQ=255)                                                                                                                           cccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGtt                      >  5:278733/1‑149 (MQ=255)                                                                                                                           cccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGtt                      <  4:77103/149‑1 (MQ=255)                                                                                                                            ccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTg                     <  5:177629/149‑1 (MQ=255)                                                                                                                                 ttCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGt                               >  4:30247/1‑134 (MQ=255)                                                                                                                                 ttCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGt                               <  3:30247/134‑1 (MQ=255)                                                                                                                                     ccGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGAGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGc             >  2:195765/1‑148 (MQ=255)                                                                                                                                          ggCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCTTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGc       <  1:172164/149‑1 (MQ=255)                                                                                                                                               gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCg     <  1:47929/146‑1 (MQ=255)                                                                                                                                               gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCg     >  2:47929/1‑146 (MQ=255)                                                                                                                                                cccGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACt  <  2:225011/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TGCGCGAGCAGATCGAGGCCTTGATTGCCCGGCACGGCTTGCAGCAGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACT  >  NC_002947/3555172‑3555462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.