New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3555318 =	31 (0.630)	3 (0.060)	3/248	NT	9.2%	coding (934/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	3555365 =	30 (0.650)					coding (981/1203 nt)	PP_3139	group 1 family glycosyl transferase

AGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGGGCGAGGTGGCCTAC  >  NC_002947/3555217‑3555512                                                                                                                                                     |                                                                                                                                                    ggcagtcggccatggctgttgccaactcgtccacggcaccggctgggaacagccagccgttttcgccaggccgcaccagctcggggatacccgctacatagGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGaccacc                                                                                                                                                     >  5:30359‑M1/102‑149 (MQ=255)  gcaAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCt                                                                                                                                                    <  6:124560/149‑1 (MQ=255)      gTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATg                                                                                                                                                 >  4:153985/1‑148 (MQ=255)         cGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGc                                                                                                                                             >  8:117207/1‑149 (MQ=255)         cGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGc                                                                                                                                             <  5:7204/149‑1 (MQ=255)          gTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCg                                                                                                                                            <  1:270270/149‑1 (MQ=255)           tATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCgg                                                                                                                                           <  7:117207/149‑1 (MQ=255)                       gATGAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGa                                                                                                                                 <  7:60539/147‑1 (MQ=255)                           agcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCATCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTATCGGGTATCCCCGAGCTGGt                                                                                                                           <  6:137175/149‑1 (MQ=255)                           agcagTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGt                                                                                                                           >  2:172164/1‑149 (MQ=255)                                     aGGTACGCGAGGAAATCCTGGCCGCCCGCGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGc                                                                                                                 <  4:8491/149‑1 (MQ=255)                                                gAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctg                                                                                                      >  3:213908/1‑149 (MQ=255)                                                   aTCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACggctggct                                                                                                   >  3:77103/1‑149 (MQ=255)                                                          ccgccCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTcc                                                                                              >  8:17416/1‑147 (MQ=255)                                                                   cgcTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGc                                                                                    <  3:153985/148‑1 (MQ=255)                                                                      tGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTg                                                                                >  6:177629/1‑149 (MQ=255)                                                                        gTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATGATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTg                                                                                <  7:292622/147‑1 (MQ=255)                                                                          gCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGAc                                                                             >  5:209574/1‑148 (MQ=255)                                                                              cccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGtt                                                                        >  5:278733/1‑149 (MQ=255)                                                                              cccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGtt                                                                        <  4:77103/149‑1 (MQ=255)                                                                               ccAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTg                                                                       <  5:177629/149‑1 (MQ=255)                                                                                    ttCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGt                                                                                 >  4:30247/1‑134 (MQ=255)                                                                                    ttCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGt                                                                                 <  3:30247/134‑1 (MQ=255)                                                                                        ccGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGAGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGc                                                               >  2:195765/1‑148 (MQ=255)                                                                                             ggCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCTTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGc                                                         <  1:172164/149‑1 (MQ=255)                                                                                                  gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCg                                                       <  1:47929/146‑1 (MQ=255)                                                                                                  gCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCg                                                       >  2:47929/1‑146 (MQ=255)                                                                                                   cccGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACt                                                    <  2:225011/148‑1 (MQ=255)                                                                                                     ggtggtcagcacgggccggcgcaaggccatggcctccatgatgaccacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGcc                                                 >  5:30359‑M2/49‑149 (MQ=255)                                                                                                       tggtcagcacgggccggcgcaaggccatggcctccatgatgaccacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTg                                               >  4:287235‑M2/47‑149 (MQ=255)                                                                                                       TGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTg                                               >  6:278733‑M1/1‑149 (MQ=255)                                                                                                         gtcagcacgggccggcgcaaggccatggcctccatgatgaccacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGgc                                             <  3:287235‑M2/105‑1 (MQ=255)                                                                                                               atGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAAcc                                       >  1:8118/1‑149 (MQ=255)                                                                                                                 ggAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCgg                                     >  3:81142/1‑149 (MQ=255)                                                                                                                            ccTTGCGCCGGCCCGTGCTGACTCCCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTg                          >  7:47414/1‑149 (MQ=255)                                                                                                                              ttGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTg                          >  5:114913/1‑147 (MQ=255)                                                                                                                                        ccGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGGGc              >  4:268910/1‑149 (MQ=255)                                                                                                                                               gaccacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGGGCGAGGTgg       >  1:32515‑M2/7‑149 (MQ=255)                                                                                                                                                accacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGc                         <  8:217514‑M2/125‑1 (MQ=255)                                                                                                                                                accacCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGc                         >  7:217514‑M2/6‑130 (MQ=255)                                                                                                                                                     cTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGGGCGAGGTGGCCTAc  >  3:105938/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCAAGTGCGTATCACTGGCTGGATCAGCAGTGCGCAGGTACGCGAGGAAATCCTGGCCGCCCGTGCGCTGGTGCTACCCAGCTTCGCCGAGGGCTTGCCCGTGGTCATCATGGAGGCCATGGCCTTGCGCCGGCCCGTGCTGACCACCTATGTAGCGGGTATCCCCGAGCTGGTGCGGCCTGGCGAAAACGGCTGGCTGTTCCCAGCCGGTGCCGTGGACGAGTTGGCAACAGCCATGGCCGACTGCCTGGCGCAACCGGCCGAGGTACTGCAGCGCATGGGCGAGGTGGCCTAC  >  NC_002947/3555217‑3555512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.