New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3802681	42 (0.860)	4 (0.090)	4/248	NT	8.8%	coding (1236/3048 nt)	PP_3361	aminotransferase
	?	NC_002947	= 3802739	43 (0.930)					coding (1178/3048 nt)	PP_3361	aminotransferase

GGCAATCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAG  >  NC_002947/3802534‑3802827                                                                                                                                                    |                                                                                                                                                   ggCAATCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCg                                                                                                                                                   <  8:284124/149‑1 (MQ=255)   cAATCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCggg                                                                                                                                                 <  5:197450/149‑1 (MQ=255)   cAATCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCggg                                                                                                                                                 <  3:303251/149‑1 (MQ=255)    aaTCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCgggg                                                                                                                                                >  5:133808/1‑149 (MQ=255)        ggTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCtt                                                                                                                                            <  7:270830/149‑1 (MQ=255)                   cggcgTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCag                                                                                                                                 <  4:212575/149‑1 (MQ=255)                    ggcgTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCaga                                                                                                                                <  2:177376/149‑1 (MQ=255)                     gcgTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCagag                                                                                                                               <  3:274607/149‑1 (MQ=255)                       gTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGaa                                                                                                                             >  7:131251/1‑149 (MQ=255)                          ccTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAatt                                                                                                                           >  3:125746/1‑148 (MQ=255)                             gctgGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCCCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAattcatt                                                                                                                       >  3:10283/1‑149 (MQ=255)                                   aTCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTcgacca                                                                                                                 >  7:55646/1‑149 (MQ=255)                                   aTCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTccacca                                                                                                                 >  6:35995/1‑149 (MQ=255)                                         aaaTCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGt                                                                                                           <  4:125746/149‑1 (MQ=255)                                          aaTCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTc                                                                                                          <  8:131251/149‑1 (MQ=255)                                          aaTCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTc                                                                                                          >  3:42378/1‑149 (MQ=255)                                                  cccACATGCAGGGTCCGGGGCTGCCCCTTGATGAAGCGAGACTCCAAGGCGCTGTCGGTATAGACGGCACTTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGc                                                                                                  <  6:84629/149‑1 (MQ=255)                                                   ccACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGCCTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGCAGTCATGCCCCCACCGCGTCGCATCTGc                                                                                                  >  5:84629/1‑148 (MQ=255)                                                   ccACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTATCTCGCCCCATGGCCCGATGCCCAGCagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcac                                                                                                  >  3:138618‑M1/1‑98 (MQ=255)                                                   ccACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTg                                                                                                   >  5:277075/1‑147 (MQ=255)                                                   ccACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGc                                                                                                  <  4:10283/148‑1 (MQ=255)                                                        tGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGgcg                                                                                            <  7:31439/149‑1 (MQ=255)                                                             ggTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgct                                                                                       <  2:141397‑M2/149‑4 (MQ=255)                                                               tCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcacaaggccccgctgg                                                                                     <  7:32610‑M1/149‑64 (MQ=255)                                                               tCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgg                                                                                     <  4:197497‑M2/149‑6 (MQ=255)                                                                 cGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTATCTCGCCCCATGGCCCGATGCCCAGCagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcacaaggccccgctggg                                                                                    <  4:138618‑M1/148‑65 (MQ=255)                                                                     gctgcCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAg                                                                               <  3:197497/149‑1 (MQ=255)                                                                         ccccTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCaa                                                                           <  3:254896/149‑1 (MQ=255)                                                                             ttGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATgg                                                                        >  2:276967/1‑148 (MQ=255)                                                                               gatgaAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATTG‑CCTCGGCCCAGCagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcacaaggccccgctgggcatcgggccatgggg                                                                     <  3:269702‑M1/148‑80 (MQ=255)                                                                                         gaCTCAAAGGCGCTGTCGGTATAGCCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggct                                                           >  5:99110/1‑149 (MQ=255)                                                                                          aCTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggctg                                                          <  6:277075/149‑1 (MQ=255)                                                                                            tCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggctgg                                                         >  4:237501/1‑148 (MQ=255)                                                                                              aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAt                                                               >  6:259994/1‑140 (MQ=255)                                                                                              aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAt                                                               <  5:259994/140‑1 (MQ=255)                                                                                              aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGAGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCAt                                                      >  3:143444/1‑149 (MQ=255)                                                                                               aaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATc                                                     >  1:150591/1‑149 (MQ=255)                                                                                                     cTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                               >  7:274253/1‑149 (MQ=255)                                                                                                     cTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                               <  1:141397/149‑1 (MQ=255)                                                                                                        tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                               <  8:274253/146‑1 (MQ=255)                                                                                                        tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAAc                                              <  3:237501/147‑1 (MQ=255)                                                                                                        tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACg                                             <  4:143444/148‑1 (MQ=255)                                                                                                            tataGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGCCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGACGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGgcgc                                         >  6:196414/1‑148 (MQ=255)                                                                                                              taGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGAt                                      >  3:56381/1‑149 (MQ=255)                                                                                                               aGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGAt                                      <  4:42378/148‑1 (MQ=255)                                                                                                                 aCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCTCCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGAc                                   <  6:133808/149‑1 (MQ=255)                                                                                                                 aCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGAc                                   >  2:99214/1‑149 (MQ=255)                                                                                                                     cACGTACCTCGCCCCATGGCCCGATGCCCGGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTg                               >  5:93365/1‑149 (MQ=255)                                                                                                                      aCGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGt                              <  1:276967/149‑1 (MQ=255)                                                                                                                         tACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCga                           <  8:55646/149‑1 (MQ=255)                                                                                                                               gCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCGAGAAt                       <  5:35995/147‑1 (MQ=255)                                                                                                                                ccccATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggccgaggcaatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatc                     <  3:269702‑M2/148‑70 (MQ=255)                                                                                                                                         ccGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCGAGAATGGCGGCTGACgg           >  3:114543/1‑149 (MQ=255)                                                                                                                                               cccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggcatcgggccatggggcgagatacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccg      <  4:138618‑M2/148‑85 (MQ=255)                                                                                                                                                ccAGCagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcacaaggccccgctgggcatcgggccatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccgga    <  4:197497‑M1/149‑145 (MQ=255)                                                                                                                                                ccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggcatcgggccatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccgga    <  7:32610‑M2/149‑87 (MQ=255)                                                                                                                                                ccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCGAGAATGGCGGCTGACGGGCGCAc     >  1:119715/1‑148 (MQ=255)                                                                                                                                                  agcagcgccctgcagatgcgacgcggtggtggaatgaattctctgccgcgcacaaggccccgctgggcatcgggccatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccggacc  <  2:141397‑M1/149‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGCAATCGGTGCGTACAGCGGCGTACCTGCTGGCATCAGCAAATCTACTCCCACATGCAGGGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCGATGACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAG  >  NC_002947/3802534‑3802827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.