New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3802681	42 (0.860)	4 (0.090)	4/248	NT	8.8%	coding (1236/3048 nt)	PP_3361	aminotransferase
	?	NC_002947	= 3802739	43 (0.930)					coding (1178/3048 nt)	PP_3361	aminotransferase

GGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTCCCCCGCACCTTCG  >  NC_002947/3802594‑3802885                                                                                                                                                  |                                                                                                                                                     ggTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgct                                                                                                                                                   <  2:141397‑M2/149‑4 (MQ=255)   tCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgg                                                                                                                                                 <  4:197497‑M2/149‑6 (MQ=255)         gctgcCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAg                                                                                                                                           <  3:197497/149‑1 (MQ=255)             ccccTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCaa                                                                                                                                       <  3:254896/149‑1 (MQ=255)                 ttGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATgg                                                                                                                                    >  2:276967/1‑148 (MQ=255)                             gaCTCAAAGGCGCTGTCGGTATAGCCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggct                                                                                                                       >  5:99110/1‑149 (MQ=255)                              aCTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggctg                                                                                                                      <  6:277075/149‑1 (MQ=255)                                tCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAtggctgg                                                                                                                     >  4:237501/1‑148 (MQ=255)                                  aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAt                                                                                                                           >  6:259994/1‑140 (MQ=255)                                  aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCAt                                                                                                                           <  5:259994/140‑1 (MQ=255)                                  aaaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGAGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCAt                                                                                                                  >  3:143444/1‑149 (MQ=255)                                   aaGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATc                                                                                                                 >  1:150591/1‑149 (MQ=255)                                         cTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                                                                                           >  7:274253/1‑149 (MQ=255)                                         cTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                                                                                           <  1:141397/149‑1 (MQ=255)                                            tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCaaa                                                                                                           <  8:274253/146‑1 (MQ=255)                                            tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAAc                                                                                                          <  3:237501/147‑1 (MQ=255)                                            tCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACg                                                                                                         <  4:143444/148‑1 (MQ=255)                                                tataGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGCCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGACGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGgcgc                                                                                                     >  6:196414/1‑148 (MQ=255)                                                  taGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAt                                                                                                 >  3:56381/1‑149 (MQ=255)                                                   aGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAt                                                                                                 <  4:42378/148‑1 (MQ=255)                                                     aCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCTCCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GAc                                                                                             <  6:133808/149‑1 (MQ=255)                                                     aCGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GAc                                                                                             >  2:99214/1‑149 (MQ=255)                                                         cACGTACCTCGCCCCATGGCCCGATGCCCGGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTg                                                                                         >  5:93365/1‑149 (MQ=255)                                                          aCGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGt                                                                                        <  1:276967/149‑1 (MQ=255)                                                             tACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCga                                                                                     <  8:55646/149‑1 (MQ=255)                                                                   gCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAAt                                                                                 <  5:35995/147‑1 (MQ=255)                                                                    ccccATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggccgaggcaatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatc                                                                                 <  3:269702‑M2/148‑70 (MQ=255)                                                                             ccGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACgg                                                                     >  3:114543/1‑149 (MQ=255)                                                                                   cccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggcatcgggccatggggcgagatacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccg                                                                  <  4:138618‑M2/148‑85 (MQ=255)                                                                                    ccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggcatcgggccatggggcgaggtacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccgga                                                                <  7:32610‑M2/149‑87 (MQ=255)                                                                                    ccAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCAc                                                               >  1:119715/1‑148 (MQ=255)                                                                                          gggCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCg                                                        <  6:93365/149‑1 (MQ=255)                                                                                            gCCATGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGc                                                      <  2:280541/149‑1 (MQ=255)                                                                                              cTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGgc                                                                                                       >  5:212406/1‑100 (MQ=255)                                                                                              cTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGgc                                                                                                       <  6:212406/100‑1 (MQ=255)                                                                                                 gtgCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTgctgggcatcgggccatggggcgagatacgtgccgtctataccgacagcgcctttgagtctcgcttcatcaaggggcagcaccggaccctgcatgtgg                                                    >  3:138618‑M2/1‑50 (MQ=255)                                                                                                 gtgCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACg                                                 >  4:253509/1‑149 (MQ=255)                                                                                                   gcgcGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGAc                                               >  7:81278/1‑149 (MQ=255)                                                                                                     gcgGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACtt                                             <  4:56381/149‑1 (MQ=255)                                                                                                           gagaATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGtt                                       <  4:114543/149‑1 (MQ=255)                                                                                                               attcattcCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTc                                    <  6:99110/148‑1 (MQ=255)                                                                                                                        accaccGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAg                          >  1:29032/1‑149 (MQ=255)                                                                                                                          caccGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAgcg                        >  4:160620/1‑149 (MQ=255)                                                                                                                                   gCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTc               >  2:187145/1‑149 (MQ=255)                                                                                                                                      tCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTcccc            >  2:279208/1‑149 (MQ=255)                                                                                                                                       cTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGc                                                      <  8:268733/106‑1 (MQ=255)                                                                                                                                       cTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGc                                                      >  7:268733/1‑106 (MQ=255)                                                                                                                                        tGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTc                                    >  1:139268/1‑123 (MQ=255)                                                                                                                                        tGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTc                                    <  2:139268/123‑1 (MQ=255)                                                                                                                                         gCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTCCCCCGc         >  2:230734/1‑149 (MQ=255)                                                                                                                                              gcgcTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTCCCCCGCACCtt    <  8:81278/149‑1 (MQ=255)                                                                                                                                                  tgctgGGCCTAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGCTCATCCTCCTTGTACAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTCCCCCGCACCTTCg  <  1:99214/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGTCCGGTGCTGCCCCTTGATGAAGCGAGACTCAAAGGCGCTGTCGGTATAGACGGCACGTACCTCGCCCCATGGCCCGATGCCCAGCGGGGCCTTGTGCGCGGCAGAGAATTCATTCCACCACCGCGTCGCATCTGCAGGGCGCTGCTGGGCCGAGGCAATGGTCATCTCATGGCTGGCATCGCCAAACGGCGC‑GAT‑GACCTTGTCGAGAATGGCGGCTGACGGGCGCACCAGGTCGGCAAACGACTTGTGGTTGTCGGCAATCCAGCGGCGGACTTCCCCCGCACCTTCG  >  NC_002947/3802594‑3802885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.