New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3900284	30 (0.610)	6 (0.130)	4/246	NT	16.6%	coding (692/1620 nt)	PP_3443	glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	= 3900313	32 (0.700)					coding (721/1620 nt)	PP_3443	glyceraldehyde‑3‑phosphate dehydrogenase

GGGGCCCTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTGAAGAAACTGCACCCACGCCCGCATCGTCTG  >  NC_002947/3900138‑3900429                                                                                                                                                   |                                                                                                                                                  ggggCCCTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAg                                                                                                                                                 >  3:192206/1‑149 (MQ=255) ggggCCCTACAACTACCCGCTGAACGACACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAg                                                                                                                                                 >  8:19723/1‑149 (MQ=255) gggaCCCTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAg                                                                                                                                                 >  2:29858/1‑149 (MQ=255)  gggCCCTACAACTACCCGCTGAACGAGACGTTCACCACGCTCATCCCGGCGCTGATCATGGGAAACACGGTTGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAg                                                                                                                                                 <  5:250791/148‑1 (MQ=255)     cccTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGt                                                                                                                                             <  7:19723/149‑1 (MQ=255)       cTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGa                                                                                                                                           <  5:229105/149‑1 (MQ=255)        tACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGAt                                                                                                                                          >  7:283774/1‑149 (MQ=255)            aCTACCCGCGGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGGGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATGCGAGCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAAt                                                                                                                                      <  5:194478/149‑1 (MQ=255)             cTACCCGCTGAACGAGACCTTCACTACGCTCATCCCGGCGCGGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATg                                                                                                                                     <  6:259446/149‑1 (MQ=255)             cTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagat                                                                                                                                      >  7:200194‑M1/1‑135 (MQ=255)                cccGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCa                                                                                                                                  <  7:53996/149‑1 (MQ=255)                   gCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATc                                                                                                                                >  1:221452/1‑148 (MQ=255)                                ttCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGgccg                                                                                                                  <  4:109421‑M2/149‑5 (MQ=255)                                  caccacGCTCCTCCCGGCGCTGCTCATGGGCAACACGGCGGTGTTCAAGCCGCCCCAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagatgacattgatcacgcctgccgg                                                                                                                 <  2:272940‑M1/148‑35 (MQ=255)                                  caccacGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagatgacattgatcacgcctgccgg                                                                                                                 <  6:186056‑M1/148‑35 (MQ=255)                                    ccacGCTCATCCCGGCGCTGATCATGTTCAACAAGGTGGTTTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagatgacattgatcacgcctgccgggaa                                                                                                              <  8:200194‑M1/149‑38 (MQ=255)                                    ccacGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaa                                                                                                              >  4:192206‑M2/1‑141 (MQ=255)                                             tCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAgc                                                                                                     >  7:195671/1‑149 (MQ=255)                                                 ggCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAgcgcgc                                                                                                 <  2:158313/149‑1 (MQ=255)                                                   cgcTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCTACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTg                                                                                               <  2:221452/149‑1 (MQ=255)                                                    gcTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGa                                                                                              <  4:7421/149‑1 (MQ=255)                                                      tGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATg                                                                                            >  3:280787/1‑149 (MQ=255)                                                        aTCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATg                                                                                            <  8:127697/147‑1 (MQ=255)                                                        aTCATGGGCAACACGGTGGTGGTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATg                                                                                            <  4:167261/147‑1 (MQ=255)                                                         tCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGc                                                                                          >  6:298106/1‑148 (MQ=255)                                                              ggCAACAGGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCg                                                                                     <  8:283774/148‑1 (MQ=255)                                                                   cacGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAgg                                                                               >  8:5041/1‑149 (MQ=255)                                                                       gtggtgTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGa                                                                           <  5:6299/149‑1 (MQ=255)                                                                              tCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTc                                                                    <  8:195671/149‑1 (MQ=255)                                                                                    cGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTc                                                              <  1:29858/149‑1 (MQ=255)                                                                                        cAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagatgacattgatcacgcctgccgg                                                                                                                 >  4:266300‑M1/1‑60 (MQ=255)                                                                                        cAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCcgcgtccatagatgacattgatcacgcctgccgg                                                                                                                 <  3:266300‑M1/94‑35 (MQ=255)                                                                                        cAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCg                                                          >  8:194731/1‑149 (MQ=255)                                                                                                gCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCca                                                   >  6:8481/1‑148 (MQ=255)                                                                                                  gTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACaa                                                <  5:289641/149‑1 (MQ=255)                                                                                                        ctgATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGgccgc                                          >  3:174656/1‑149 (MQ=255)                                                                                                           aTCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGGCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCa                                        <  5:35607/148‑1 (MQ=255)                                                                                                                  ccTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCt                                 >  2:163135/1‑148 (MQ=255)                                                                                                                      gCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTgaa                              <  4:280787/147‑1 (MQ=255)                                                                                                                          gAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTGAAGAAACt                        <  5:298106/149‑1 (MQ=255)                                                                                                                                            ttCCCGGCcgcgtccatagatgacattgatcacgcctgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttggccggcttgaacaccaccgtgttgcccatgatcagcgccgggatgagcgtgg      >  4:192206‑M1/1‑8 (MQ=255)                                                                                                                                            ttCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttggccggcttgaaaaccaccttgttgaacatgatcagcgccgggatgagcgtgg      <  8:200194‑M2/149‑113 (MQ=255)                                                                                                                                            ttCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAg                                                                                >  7:172230/1‑75 (MQ=255)                                                                                                                                            ttCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAg                                                                                <  8:172230/75‑1 (MQ=255)                                                                                                                                               ccGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttggccggcttgaacaccaccgtgttgcccatgatcagcgccgggatgagcgtggtg    <  6:186056‑M2/148‑115 (MQ=255)                                                                                                                                               ccGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttg                                                          >  4:266300‑M2/1‑34 (MQ=255)                                                                                                                                               ccGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttg                                                          <  3:266300‑M2/94‑61 (MQ=255)                                                                                                                                               ccGGCAGGCGTGATCAATGTCATCTATGGACGCGgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaactggggcggcttgaacaccgccgtgttgcccatgagcagcgccgggaggagcgtggtg    <  2:272940‑M2/148‑115 (MQ=255)                                                                                                                                               ccGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTGAAGAAACTGCACCCACGCCCGCATCGTCt   <  1:163135/149‑1 (MQ=255)                                                                                                                                                cGGCcgcgtccatagatgacattgatcacgcctgccgggaagctgtcgcggaacgcttcgagcaagggtcggatcagcagtacgccgaacttggccggcttgaacaccaccgtgttgcccatgatcagcgccgggatgagcgtggtgaa  <  4:109421‑M1/149‑146 (MQ=255)                                                                                                                                                cGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTGAAGaaa                          >  6:285705/1‑125 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GGGGCCCTACAACTACCCGCTGAACGAGACCTTCACCACGCTCATCCCGGCGCTGATCATGGGCAACACGGTGGTGTTCAAGCCGGCCAAGTTCGGCGTACTGCTGATCCGACCCTTGCTCGAAGCGTTCCGCGACAGCTTCCCGGCAGGCGTGATCAATGTCATCTATGGACGCGGCCGGGAAACGGTGAGCGCGCTGATGGCCAGCGGCAAGGTCGATGTATTCGCCTTCATCGGCACCCACAAGGCCGCCAGCGACCTGAAGAAACTGCACCCACGCCCGCATCGTCTG  >  NC_002947/3900138‑3900429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.