New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3921612	34 (0.690)	4 (0.090)	4/246	NT	10.3%	coding (154/1689 nt)	acs	acyl‑CoA synthetase
	?	NC_002947	= 3921702	38 (0.830)					coding (64/1689 nt)	acs	acyl‑CoA synthetase

TCGCGCCAACCTTGGCGCTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTG  >  NC_002947/3921480‑3921759                                                                                                                                     |                                                                                                                                                     cagcgcCAAGGTTGGCGCTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCACCACgtg                                                                                                                                     >  5:239484/3‑149 (MQ=255)     gcCAACCTTGGCGCTGGCGAACTGGGTAATTGACCACTCCGCGCAGTTGGGTGCCCAGAAGCCAACACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACCGCATCCGCCAG‑TTTCCGCCACGTGTAgc                                                                                                                                 >  1:175280/1‑149 (MQ=255)              ggCGCTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGc                                                                                                                          <  6:312767/147‑1 (MQ=255)              ggCGCTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGc                                                                                                                          <  2:97107/147‑1 (MQ=255)                  cTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATg                                                                                                                    <  2:175280/149‑1 (MQ=255)                    ggCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGt                                                                                                                  >  3:233497/1‑149 (MQ=255)                     gCGAACTGGGTAATGCACCACTCGTCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGt                                                                                                                  <  8:123968/148‑1 (MQ=255)                     gCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCACCACGTGTAGCGCAGGGCCTGATgg                                                                                                                   <  6:239484/147‑1 (MQ=255)                           tGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAaccac                                                                                                           >  6:115816/1‑149 (MQ=255)                             ggTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAaccac                                                                                                           <  3:253597/147‑1 (MQ=255)                                    caccacTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCt                                                                                                   >  6:29914/1‑148 (MQ=255)                                     accacTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCa                                                                                                 >  8:246234/1‑149 (MQ=255)                                       cacTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACg                                                                                               <  7:246234/149‑1 (MQ=255)                                            ggCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCgg                                                                                          >  1:296437/1‑149 (MQ=255)                                             gcgcAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCgg                                                                                          <  1:238189/149‑1 (MQ=255)                                                     gggTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGTCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCgg                                                                                  <  5:29914/148‑1 (MQ=255)                                                      ggTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCggg                                                                                 <  5:119330/148‑1 (MQ=255)                                                                      gACGTTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAg                                                                <  3:260970/149‑1 (MQ=255)                                                                        cGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGc                                                              <  2:296437/149‑1 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCgacgccttcgacgccaccgtagcccgcttccccgaccgtg                                                                                                              <  7:35842‑M1/95‑41 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCgacgccttcgacgccaccgtagcccgcttccccgaccgtg                                                                                                              >  8:35842‑M1/1‑55 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAggg                                                                                                                           <  1:37047/81‑1 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAggg                                                                                                                           >  2:37047/1‑81 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgcc                                                        <  2:99367‑M2/148‑4 (MQ=255)                                                                               cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGAGTCgcc                                                        <  4:13496‑M2/148‑4 (MQ=255)                                                                                 ggCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCgacgccttcgacgccaccgtagcccgcttccccgaccgtgaggcgctggtggttcaccatcaggccctgcgctacacgtggcggcaactggccgat                                                      >  7:284643‑M1/1‑53 (MQ=255)                                                                                   cTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgc                                                   >  3:234368‑M2/1‑141 (MQ=255)                                                                                    tGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCa                                                  >  3:208006/1‑149 (MQ=255)                                                                                    tGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCa                                                  >  6:304589/1‑149 (MQ=255)                                                                                       aCGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCgacgccttcgacgccaccgtagcccgcttccccgaccgtgaggcgctggtggttcaccatcaggccctgcgctacacgtggcggcaactggccgatgccgtc                                                <  8:284643‑M1/149‑103 (MQ=255)                                                                                           ccAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGt                                            >  3:190964/1‑148 (MQ=255)                                                                                           ccAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGt                                            >  8:250249/1‑148 (MQ=255)                                                                                                 ccATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAgg                                     <  4:190964/149‑1 (MQ=255)                                                                                                    tCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGc                                  >  7:65414/1‑149 (MQ=255)                                                                                                      aGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCtt                                <  5:115816/149‑1 (MQ=255)                                                                                                       gcgcgcGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTg                               >  5:180185/1‑149 (MQ=255)                                                                                                           gcgGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCt                           >  3:277327/1‑149 (MQ=255)                                                                                                                     tGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTg                 >  1:34690/1‑149 (MQ=255)                                                                                                                       gTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTgg                <  4:277327/148‑1 (MQ=255)                                                                                                                       gTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTgg                <  7:250249/148‑1 (MQ=255)                                                                                                                          gACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCCCCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGgtg             >  1:170576/1‑148 (MQ=255)                                                                                                                          gACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgt            <  8:284643‑M2/149‑48 (MQ=255)                                                                                                                              gCATCGGCgacgccttcgacgccaccgtagcccgcttccccgaccgtgaggcgctggtggttcaccatcaggccctgcgctacacgtggcggcaactggccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcag         >  3:234368‑M1/1‑8 (MQ=255)                                                                                                                                aTCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcc      >  7:284643‑M2/1‑96 (MQ=255)                                                                                                                                   ggCgactccttcgacgccaccgtagcccgcttccccgaccgtgaggcgctggtggttcaccatcaggccctgcgctacacgtggcggcaactggccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcccg     <  4:13496‑M1/148‑146 (MQ=255)                                                                                                                                   ggCgacgccttcgacgccaccgtagcccgcttccccgaccgtgaggcgctggtggttcaccatcaggccctgcgctacacgtggcggcaactggccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcccg     <  2:99367‑M1/148‑146 (MQ=255)                                                                                                                                   ggCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCt   <  8:65414/149‑1 (MQ=255)                                                                                                                                    gCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTg  >  1:223869/1‑149 (MQ=255)                                                                                                                                     |                                                                                                                                                     TCGCGCCAACCTTGGCGCTGGCGAACTGGGTAATGCACCACTCGGCGCAGTTGGGTGCCCAGATGCCAAGACGGTCACCGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAG‑TTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTG  >  NC_002947/3921480‑3921759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.