New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3921612	34 (0.690)	4 (0.090)	4/246	NT	10.3%	coding (154/1689 nt)	acs	acyl‑CoA synthetase
	?	NC_002947	= 3921702	38 (0.830)					coding (64/1689 nt)	acs	acyl‑CoA synthetase

CGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGC  >  NC_002947/3921558‑3921840                                                                                                                                                 |                                                                                                                                           cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgcc                                                                                                                                         <  2:99367‑M2/148‑4 (MQ=255) cGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGAGTCgcc                                                                                                                                         <  4:13496‑M2/148‑4 (MQ=255)     cTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgc                                                                                                                                    >  3:234368‑M2/1‑141 (MQ=255)      tGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCa                                                                                                                                   >  6:304589/1‑149 (MQ=255)      tGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCa                                                                                                                                   >  3:208006/1‑149 (MQ=255)             ccAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGt                                                                                                                             >  8:250249/1‑148 (MQ=255)             ccAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGt                                                                                                                             >  3:190964/1‑148 (MQ=255)                   ccATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAgg                                                                                                                      <  4:190964/149‑1 (MQ=255)                      tCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGc                                                                                                                   >  7:65414/1‑149 (MQ=255)                        aGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCtt                                                                                                                 <  5:115816/149‑1 (MQ=255)                         gcgcgcGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTg                                                                                                                >  5:180185/1‑149 (MQ=255)                             gcgGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCt                                                                                                            >  3:277327/1‑149 (MQ=255)                                       tGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTg                                                                                                  >  1:34690/1‑149 (MQ=255)                                         gTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTgg                                                                                                 <  7:250249/148‑1 (MQ=255)                                         gTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTgg                                                                                                 <  4:277327/148‑1 (MQ=255)                                            gACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCCCCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGgtg                                                                                              >  1:170576/1‑148 (MQ=255)                                            gACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgt                                                                                             <  8:284643‑M2/149‑48 (MQ=255)                                                  aTCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcc                                                                                       >  7:284643‑M2/1‑96 (MQ=255)                                                     ggCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCt                                                                                    <  8:65414/149‑1 (MQ=255)                                                      gCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTg                                                                                   >  1:223869/1‑149 (MQ=255)                                                         aGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTgggg                                                                                <  6:180185/149‑1 (MQ=255)                                                          gTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGc                                                                               >  1:151728/1‑149 (MQ=255)                                                                gccACGTGTAGCGCTGGGCCTGATGGTGAACCACCCGCGCCTCACGGTCGGGGGAGCGGGCTACGGTGGCGTCGACGGCGTGGCCGATGCATTGGGTCAGGGGGGGCTTGTGCTGGGTGCCGTGGGTGTAGGTTGGCTGGGGCTTGGGc                                                                         >  8:143328/1‑149 (MQ=255)                                                                gccACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTgg                                                                                                          <  4:89455/116‑1 (MQ=255)                                                                gccACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTgg                                                                                                          >  3:89455/1‑116 (MQ=255)                                                                 cctcgggtAGGGCAGGGCCTGATGGTGAACCACCTTCGCCTCACGGTGGGTGATGGGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGCGTCAGCTGGGGCTTGTGCTGGGTGCCCTGGGTTTAGCTTGGCTGGGGCATGGGCg                                                                        <  3:13496/143‑1 (MQ=255)                                                                    cGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTtc                                                                     <  4:208006/149‑1 (MQ=255)                                                                        gaGCGCAGGGCCTGATGGGGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCtt                                                                 <  4:233497/148‑1 (MQ=255)                                                                                 gCCTGATGGTGAACCACCAGCGCCTCACGGTCTGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCtt                                                        <  8:100457/149‑1 (MQ=255)                                                                                     gATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTgtgt                                                    >  7:201501/1‑149 (MQ=255)                                                                                        ggTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGgtg                                                                                              <  8:209926/104‑1 (MQ=255)                                                                                         gTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGtttt                                                 <  2:34690/148‑1 (MQ=255)                                                                                         gTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTc                                                <  3:262965/149‑1 (MQ=255)                                                                                          tGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCt                                               >  3:297600/1‑149 (MQ=255)                                                                                                  caGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGc                                       <  4:297600/149‑1 (MQ=255)                                                                                                         tCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcg                                >  4:86731/1‑149 (MQ=255)                                                                                                          cACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcccg                                                                                     <  7:35842‑M2/95‑56 (MQ=255)                                                                                                          cACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCgccgatgccgtcgaccagcacgcccgcgcgctgatggccctgggcgtgcagcccg                                                                                     >  8:35842‑M2/1‑40 (MQ=255)                                                                                                           aCGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcg                                <  8:201501/147‑1 (MQ=255)                                                                                                              gTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGt                           <  5:304589/149‑1 (MQ=255)                                                                                                              gTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGt                           >  2:282792/1‑149 (MQ=255)                                                                                                                  gggAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAAc                       >  2:260617/1‑149 (MQ=255)                                                                                                                                  tGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACagga       <  1:282792/149‑1 (MQ=255)                                                                                                                                  tGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACagga       <  2:151728/149‑1 (MQ=255)                                                                                                                                     cGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcgcg                              <  7:227329/123‑1 (MQ=255)                                                                                                                                     cGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcgcg                              >  8:227329/1‑123 (MQ=255)                                                                                                                                       tCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGgcgc  <  2:170576/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                           CGGGCTGCACGCCCAGGGCCATCAGCGCGCGGGCGTGCTGGTCGACGGCATCGGCCAGTTGCCGCCACGTGTAGCGCAGGGCCTGATGGTGAACCACCAGCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGC  >  NC_002947/3921558‑3921840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.