New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4055975 =	37 (0.760)	4 (0.090)	3/248	NT	9.4%	coding (1687/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	4056014 =	42 (0.910)					coding (1648/2406 nt)	PP_3575	ferric siderophore receptor

CTCGATCTGGCGGCTGGTGAACGGCGGGAAGATCTGGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCG  >  NC_002947/4055832‑4056120                                                                                                                                                 |                                                                                                                                                  cTCGATCTGGCTGCTGGTGAACGGCGGGAAGATCTGGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCg                                                                                                                                              <  5:101434/149‑1 (MQ=255)          gcggcTGGTGAACGGCGGGAAGATCTTGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCtttt                                                                                                                                     <  7:22745/149‑1 (MQ=255)                ggTGAACGGCGGGAAGATCTGGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCGGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGt                                                                                                                               >  5:117803/1‑149 (MQ=255)                 gTGAACGGCGGGAATCTCTGGTATTCGTTGATCGATGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATTTAATTTTCCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGt                                                                                                                               <  1:245846/149‑1 (MQ=255)                 gTGAACGGCGGGAAGATCTGGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCCTTTCTTCGTc                                                                                                                              <  3:68325/149‑1 (MQ=255)                                      cggcgtggccctggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTg                                                                                                           >  7:59577‑M1/108‑148 (MQ=255)                                       ggcgtggccctggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                         >  3:161234‑M1/107‑149 (MQ=255)                                           gTTGATCGAGGTCGATGGTGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                    <  4:32266/149‑1 (MQ=255)                                           gTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                    >  5:60471/1‑149 (MQ=255)                                               aTCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGc                                                                                                 <  6:60471/148‑1 (MQ=255)                                                 tggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                         >  5:177233‑M1/97‑139 (MQ=255)                                                 tggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                         <  6:177233‑M1/43‑1 (MQ=255)                                                        gATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCAt                                                                                                                            >  2:44230/1‑112 (MQ=255)                                                        gATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCAt                                                                                                                            <  1:44230/112‑1 (MQ=255)                                                                      gCCTTGGCTCGGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCg                                                                           <  6:117803/147‑1 (MQ=255)                                                                        cTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGc                                                                       >  6:127429/1‑149 (MQ=255)                                                                                       ccATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACACGTTGCCAgcgcgccgcca                                                          >  2:246295/1‑142 (MQ=255)                                                                                        cATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGTTGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCaga                                                        <  1:231233/148‑1 (MQ=255)                                                                                        cATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCaga                                                        <  4:204571/148‑1 (MQ=255)                                                                                              a‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCaa                                                   >  2:160640/1‑147 (MQ=255)                                                                                                     aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATGGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGc                                           >  1:96435/1‑149 (MQ=255)                                                                                                     aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATcc                                                                                      <  5:259871/106‑1 (MQ=255)                                                                                                     aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATcc                                                                                      >  6:259871/1‑106 (MQ=255)                                                                                                     aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTc                                                     <  4:152529/139‑1 (MQ=255)                                                                                                     aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTc                                                     >  3:152529/1‑139 (MQ=255)                                                                                                        cAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCgg                                         <  5:127429/148‑1 (MQ=255)                                                                                                          aCGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAAcagca                                              >  5:180585/1‑141 (MQ=255)                                                                                                          aCGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAAcagca                                              <  6:180585/141‑1 (MQ=255)                                                                                                            gagaGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGgtcgt                                     >  8:260969/1‑148 (MQ=255)                                                                                                               agCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCaa                                  >  7:9478/1‑148 (MQ=255)                                                                                                                 cTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                    >  2:273739/1‑80 (MQ=255)                                                                                                                 cTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                    <  1:273739/80‑1 (MQ=255)                                                                                                                    gTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGc                            >  8:195767/1‑149 (MQ=255)                                                                                                                        gTGACCTTGAGCAGTACGCCCCCAGAAGGTGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAg                        >  6:256738/1‑149 (MQ=255)                                                                                                                              ttGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTc                                                                                               >  7:188268/1‑72 (MQ=255)                                                                                                                              ttGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTc                                                                                               <  8:188268/72‑1 (MQ=255)                                                                                                                                gAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATc                  <  2:96435/147‑1 (MQ=255)                                                                                                                                     gTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAgg           <  1:160640/149‑1 (MQ=255)                                                                                                                                           ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAACAAGCCAAGGGTATCGGCCAGGGCCACg     >  6:254779/1‑149 (MQ=255)                                                                                                                                           ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGTGTATCGGCCAGGGCCACg     >  2:71936/1‑149 (MQ=255)                                                                                                                                           ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACg     >  6:244287/1‑149 (MQ=255)                                                                                                                                            cccAGAAGGTGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCTGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGc    <  5:256738/149‑1 (MQ=255)                                                                                                                                              cAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCg  <  7:195767/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CTCGATCTGGCGGCTGGTGAACGGCGGGAAGATCTGGTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAA‑TTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCAACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCG  >  NC_002947/4055832‑4056120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.