New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4055975 =	37 (0.760)	4 (0.090)	3/248	NT	9.4%	coding (1687/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	4056014 =	42 (0.910)					coding (1648/2406 nt)	PP_3575	ferric siderophore receptor

GTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCGTGTAGAC  >  NC_002947/4055868‑4056143                                                                                                                                                   |                                                                                                                                    cggcgtggccctggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTg                                                                                                                                    >  7:59577‑M1/108‑148 (MQ=255)  ggcgtggccctggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                                                  >  3:161234‑M1/107‑149 (MQ=255)       gTTGATCGAGGTCGATGGTGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                                             <  4:32266/149‑1 (MQ=255)       gTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                                             >  5:60471/1‑149 (MQ=255)           aTCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGc                                                                                                                          <  6:60471/148‑1 (MQ=255)            tggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                                                  <  6:177233‑M1/43‑1 (MQ=255)            tggccgatacccttggcttttttgacgaccgcctgctgttgactctgggtgcgcgctggcaacgggtgcaggtggatgactggagcgacggcatcaAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGAt                                                                                                                                  >  5:177233‑M1/97‑139 (MQ=255)                                  gCCTTGGCTCGGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCg                                                                                                    <  6:117803/147‑1 (MQ=255)                                    cTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGc                                                                                                >  6:127429/1‑149 (MQ=255)                                                   ccATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACACGTTGCCAgcgcgccgcca                                                                                   >  2:246295/1‑142 (MQ=255)                                                    cATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGTTGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCaga                                                                                 <  1:231233/148‑1 (MQ=255)                                                    cATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCaga                                                                                 <  4:204571/148‑1 (MQ=255)                                                          aTTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCa‑‑a                                                                          >  2:160640/1‑147 (MQ=255)                                                                aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATGGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGc                                                                  >  1:96435/1‑149 (MQ=255)                                                                aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATcc                                                                                                               <  5:259871/106‑1 (MQ=255)                                                                aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATcc                                                                                                               >  6:259871/1‑106 (MQ=255)                                                                aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTc                                                                              <  4:152529/139‑1 (MQ=255)                                                                aTACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTc                                                                              >  3:152529/1‑139 (MQ=255)                                                                   cAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCgg                                                                <  5:127429/148‑1 (MQ=255)                                                                     aCGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑Acagca                                                                     <  6:180585/141‑1 (MQ=255)                                                                     aCGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑Acagca                                                                     >  5:180585/1‑141 (MQ=255)                                                                       gagaGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGgtcgt                                                            >  8:260969/1‑148 (MQ=255)                                                                          agCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCaa                                                         >  7:9478/1‑148 (MQ=255)                                                                            cTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                                             <  1:273739/80‑1 (MQ=255)                                                                            cTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGt                                                                                                                             >  2:273739/1‑80 (MQ=255)                                                                               gTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGc                                                   >  8:195767/1‑149 (MQ=255)                                                                                   gTGACCTTGAGCAGTACGCCCCCAGAAGGTGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAg                                               >  6:256738/1‑149 (MQ=255)                                                                                         ttGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTc                                                                                                                        <  8:188268/72‑1 (MQ=255)                                                                                         ttGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTc                                                                                                                        >  7:188268/1‑72 (MQ=255)                                                                                           gAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATc                                         <  2:96435/147‑1 (MQ=255)                                                                                                gTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAgg                                  <  1:160640/149‑1 (MQ=255)                                                                                                      ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAACAAGCCAAGGGTATCGGCCAGGGCCACg                            >  6:254779/1‑149 (MQ=255)                                                                                                      ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGTGTATCGGCCAGGGCCACg                            >  2:71936/1‑149 (MQ=255)                                                                                                      ccccAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACg                            >  6:244287/1‑149 (MQ=255)                                                                                                       cccAGAAGGTGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCTGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGc                           <  5:256738/149‑1 (MQ=255)                                                                                                        atcaaaggcgataccggctatgacgaagaaaaggtctcgccttTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCa                                    <  6:177233‑M2/96‑1 (MQ=255)                                                                                                        atcaaaggcgataccggctatgacgaagaaaaggtctcgccttTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCa                                    >  5:177233‑M2/44‑139 (MQ=255)                                                                                                        atcaaaggcgataccggctatgacgaagaaaaggtctcgccttTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGcc                          >  3:161234‑M2/44‑149 (MQ=255)                                                                                                         cAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCg                         <  7:195767/149‑1 (MQ=255)                                                                                                          caaaggcgataccggctatgacgaagaaaaggtctcgccttTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCg                         >  7:59577‑M2/42‑148 (MQ=255)                                                                                                                           cttcGTCATAGCCGGTATCGCCTTTGATGCCTTCGCTCCAGTCATCCACCTGCACCCGTTGCCACCGCGCACCCAGAGGCAATACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTcc          <  1:246295/148‑1 (MQ=255)                                                                                                                           cttcGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCgt        <  8:9478/148‑1 (MQ=255)                                                                                                                             tcGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCAGCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGgtc                                                              <  7:162968/92‑1 (MQ=255)                                                                                                                             tcGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGgtc                                                              >  8:162968/1‑92 (MQ=255)                                                                                                                              cGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCGTGTa     <  7:260969/148‑1 (MQ=255)                                                                                                                               gTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCGTGTAg    <  5:244287/148‑1 (MQ=255)                                                                                                                                tCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCCCGCCGGAGAAGCGGTTTTCAGTGTAGAc  >  5:301071/1‑149 (MQ=255)                                                                                                                                tCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCGTGTAGAc  <  5:254779/149‑1 (MQ=255)                                                                                                                                  aTAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAgg                                  >  1:275489/1‑115 (MQ=255)                                                                                                                                  aTAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAgg                                  <  2:275489/115‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                    GTCTTCGTTGATCGAGGTCGATGGGGCGATCTTGCCTTGGCTCAGGCCCTCCATGTAATTGGCATACAACGAGAGCTGGTCGGTGACCTTGAGCAGTACGCCCCCAGAAGGCGAGACCTTTTCTTCGTCATAGCCGGTATCGCCTTTGATGCCGTCGCTCCAGTCATCCACCTGCACCCGTTGCCAGCGCGCACCCAGAGTCA‑‑ACAGCAGGCGGTCGTCAAAAAAGCCAAGGGTATCGGCCAGGGCCACGCCGGAGAAGCGGTTTTCCGTGTAGAC  >  NC_002947/4055868‑4056143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.