New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4211401 =	31 (0.630)	3 (0.070)	3/246	NT	10.0%	coding (91/366 nt)	PP_3693	transcriptional regulator MvaT
	?	NC_002947	4211445 =	25 (0.540)					coding (47/366 nt)	PP_3693	transcriptional regulator MvaT

TGACGAGCGCGACGAGGTGACTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGC  >  NC_002947/4211253‑4211548                                                                                                                                                     |                                                                                                                                                    gaagcttcaagtcaaaaaaagagaaaccaacgtagcagaaccttgcttcctggtttaggatactcaatttacatgcccatctaaatcattgaggatcactaatgtctcgtctggccgaattccgcaagctggaacaatctttggctgcg                                                                                                                                                     <  3:95287‑M1/1‑1 (MQ=255)  gACGAGCGCGACGAGGTGACTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTg                                                                                                                                                     <  5:279396/148‑1 (MQ=255)         gcgACGAGGTGACTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCgg                                                                                                                                             >  5:156515/1‑149 (MQ=255)           gacgaGGTGACTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAg                                                                                                                                           <  6:156515/149‑1 (MQ=255)                    aCTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCCGAGCTGcaaaa                                                                                                                                   <  4:10975/148‑5 (MQ=255)                        ttCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCAt                                                                                                                                <  2:20293/147‑1 (MQ=255)                            tcGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTc                                                                                                                          <  7:272758/148‑1 (MQ=255)                            gCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCtt                                                                                                                           >  1:208369/1‑148 (MQ=255)                               aCAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGATTTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAg                                                                                                                       >  2:130036/1‑149 (MQ=255)                                   cagGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCa                                                                                                                   <  7:185352/149‑1 (MQ=255)                                           tGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTg                                                                                                           >  3:24151/1‑149 (MQ=255)                                                 cggccggcTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCg                                                                                                                >  4:303200/1‑138 (MQ=255)                                                 cggccggcTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCg                                                                                                                <  3:303200/138‑1 (MQ=255)                                                 cctggtttaggatactcaatttacatgcccatctaaatcattgaggatcactaatgtctcgtctggccgaattccgcaagctggaacaatctttggctgcGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCa                                                                                                       >  3:235301‑M1/101‑147 (MQ=255)                                                              actcaatttacatgcccatctaaatcattgaggatcactaatgtctcgtctggccgaattccgcaagctggaacaatctttggctgcGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCt                                                                                                            >  3:215443‑M1/88‑129 (MQ=255)                                                              actcaatttacatgcccatctaaatcattgaggatcactaatgtctcgtctggccgaattccgcaagctggaacaatctttggctgcGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCt                                                                                                            <  4:215443‑M1/42‑1 (MQ=255)                                                                    gAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTg                                                                                  >  6:264549/1‑149 (MQ=255)                                                                    gAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTg                                                                                  <  2:208369/149‑1 (MQ=255)                                                                      atatTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCg                                                                                <  7:198189/149‑1 (MQ=255)                                                                       tatTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCa                                                                                                                   <  7:136919/113‑1 (MQ=255)                                                                       tatTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCa                                                                                                                   >  8:136919/1‑113 (MQ=255)                                                                             ttACATCAAGCAGGCTGCACCCATACTCAGGAAGGAGGTTCCTCAGCTTGGTTTCGAATGCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCg                                                                         <  3:228904/149‑1 (MQ=255)                                                                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCa                                                                                                   >  3:294495/1‑118 (MQ=255)                                                                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCa                                                                                                   <  4:294495/118‑1 (MQ=255)                                                                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGc                                                                       >  1:136525/1‑146 (MQ=255)                                                                                      gCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGAc                                                                  >  4:297451/1‑147 (MQ=255)                                                                                      gCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGAc                                                                  >  5:266982/1‑147 (MQ=255)                                                                                             gCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTa                                                         >  1:68334/1‑149 (MQ=255)                                                                                              cACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTa                                                         <  3:254820/148‑1 (MQ=255)                                                                                                         aGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCaa                                              <  4:24151/148‑1 (MQ=255)                                                                                                             aggaggTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGaa                                                                             <  3:168060/113‑1 (MQ=255)                                                                                                             aggaggTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGAAGCCAAAGATTGTTCCAGCTTGCGGaa                                                                             >  4:168060/1‑113 (MQ=255)                                                                                                                  gTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGAt                                    >  1:64319/1‑149 (MQ=255)                                                                                                                       gCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCa                               >  1:186675/1‑149 (MQ=255)                                                                                                                                          gATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGa                     <  6:47732/140‑1 (MQ=255)                                                                                                                                          gATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGa                     >  5:47732/1‑140 (MQ=255)                                                                                                                                                   ttGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGaa    <  2:186675/148‑1 (MQ=255)                                                                                                                                                     GCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGc  <  4:95287‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGACGAGCGCGACGAGGTGACTTTTCAGCGACAGCAGGAGCCTGGCGACGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGC  >  NC_002947/4211253‑4211548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.