New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4211401 =	31 (0.630)	3 (0.070)	3/246	NT	10.0%	coding (91/366 nt)	PP_3693	transcriptional regulator MvaT
	?	NC_002947	4211445 =	25 (0.540)					coding (47/366 nt)	PP_3693	transcriptional regulator MvaT

CGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCTTTTTTTGACTTGAAGCTTC  >  NC_002947/4211301‑4211592                                                                                                                                                 |                                                                                                                                                    cctggtttaggatactcaatttacatgcccatctaaatcattgaggatcactaatgtctcgtctggccgaattccgcaagctggaacaatctttggctgcGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCa                                                                                                                                                   >  3:235301‑M1/101‑147 (MQ=255)                    gAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTg                                                                                                                              >  6:264549/1‑149 (MQ=255)                    gAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTg                                                                                                                              <  2:208369/149‑1 (MQ=255)                      atatTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCg                                                                                                                            <  7:198189/149‑1 (MQ=255)                             ttACATCAAGCAGGCTGCACCCATACTCAGGAAGGAGGTTCCTCAGCTTGGTTTCGAATGCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCg                                                                                                                     <  3:228904/149‑1 (MQ=255)                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCa                                                                                                                                               >  3:294495/1‑118 (MQ=255)                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCa                                                                                                                                               <  4:294495/118‑1 (MQ=255)                                  tCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGc                                                                                                                   >  1:136525/1‑146 (MQ=255)                                      gCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGAc                                                                                                              >  4:297451/1‑147 (MQ=255)                                      gCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGAc                                                                                                              >  5:266982/1‑147 (MQ=255)                                             gCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTa                                                                                                     >  1:68334/1‑149 (MQ=255)                                              cACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTa                                                                                                     <  3:254820/148‑1 (MQ=255)                                                         aGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCaa                                                                                          <  4:24151/148‑1 (MQ=255)                                                             aggaggTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGaa                                                                                                                         <  3:168060/113‑1 (MQ=255)                                                             aggaggTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGAAGCCAAAGATTGTTCCAGCTTGCGGaa                                                                                                                         >  4:168060/1‑113 (MQ=255)                                                                  gTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGAt                                                                                >  1:64319/1‑149 (MQ=255)                                                                       gCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCa                                                                           >  1:186675/1‑149 (MQ=255)                                                                                          gATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGa                                                                 <  6:47732/140‑1 (MQ=255)                                                                                          gATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGa                                                                 >  5:47732/1‑140 (MQ=255)                                                                                                  tgcgcagctcgctgagcttgaagccatgaagggcagctccgagctgcGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAgg                                                  >  3:235301‑M2/48‑147 (MQ=255)                                                                                                   ttGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGaa                                                <  2:186675/148‑1 (MQ=255)                                                                                                     GCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGc                                              <  4:95287‑M1/148‑1 (MQ=255)                                                                                                       agctcgctgagcttgaagccatgaagggcagctccgagctgcGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGt                                                               <  4:215443‑M2/87‑1 (MQ=255)                                                                                                       agctcgctgagcttgaagccatgaagggcagctccgagctgcGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGt                                                               >  3:215443‑M2/43‑129 (MQ=255)                                                                                                         CTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTg                                                                                                  <  8:147877‑M1/92‑1 (MQ=255)                                                                                                         CTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTg                                                                                                  >  7:147877‑M1/1‑92 (MQ=255)                                                                                                                 tGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTAc                                 <  3:39176/149‑1 (MQ=255)                                                                                                                         aTGGCTTCAAGCTCACCGTGCTGCGCAGCGAAAGATTGTTCCAGCTTGCGGAATTCTGCCAGACGAGAGATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATGCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGttt                         <  2:111936/149‑1 (MQ=255)                                                                                                                            gCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTtctc                      >  3:145365/1‑149 (MQ=255)                                                                                                                               tCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCttt                   >  1:84863/1‑149 (MQ=255)                                                                                                                                 aaGCTCAGCGTCCTGCTCAGCCAAAGTTTGTTCCAGCTTGCGGAATTCGGCCACTCGAGACATTAGTGATCCTCAATGATTTAGATGTGCATGTAAATTGAGTATCCTAAACCAGTAAGCAAGGTTCTGCTACGTTGGTTTCTCttttt                 <  8:56574/149‑1 (MQ=255)                                                                                                                                 aaGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCttttt                 <  2:136525/149‑1 (MQ=255)                                                                                                                                        gCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCTTTTTTTGACtt          >  3:229402/1‑149 (MQ=255)                                                                                                                                                cGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCTTTTTTTGACTTGAAGCTTc  <  3:95287‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CGGCCGGCTTGCGGATCCAGAATATTGATTACATCAAGCAGGCTGCACCCATACTCAGCAAGGAGGTTCCGCAGCTTGGTTTCGAATTCGATTTCCTTTTGCAGCTCGGAGCTGCCCTTCATGGCTTCAAGCTCAGCGAGCTGCGCAGCCAAAGATTGTTCCAGCTTGCGGAATTCGGCCAGACGAGACATTAGTGATCCTCAATGATTTAGATGGGCATGTAAATTGAGTATCCTAAACCAGGAAGCAAGGTTCTGCTACGTTGGTTTCTCTTTTTTTGACTTGAAGCTTC  >  NC_002947/4211301‑4211592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.