New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4251800 =	39 (0.800)	3 (0.070)	3/246	NT	7.9%	coding (233/795 nt)	PP_3726	enoyl‑CoA hydratase/isomerase family protein
	?	NC_002947	4251852 =	33 (0.720)					coding (181/795 nt)	PP_3726	enoyl‑CoA hydratase/isomerase family protein

GATGCGCAGGTCGCAGCACAGGCTGAGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTGGGAATGTC  >  NC_002947/4251652‑4251942                                                                                                                                                      |                                                                                                                                                gATGCGCAGGTCGCAGCACAGGCTGAGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCgg                                                                                                                                                 <  5:219492/149‑1 (MQ=255)   tcgaagccggcgttgcctggatcaccctcaaccgccccgagcagcgcaacgcgctggacattcccaccctcaagcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccg                                                                                                                                                 <  7:93698‑M1/1‑1 (MQ=255)     gaagccggcgttgcctggatcaccctcaaccgccccgagcagcgcaacgcgctggacattcccaccctcaagcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCa                                                                                                                                               >  2:252952‑M1/146‑148 (MQ=255)       cAGGTCGCAGCACAGGCTGAGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCtt                                                                                                                                           <  5:11164/149‑1 (MQ=255)         ccggcgttgcctggatcaccctcaaccgccccgagcagcgcaacgcgctggacattcccaccctcaagcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCAGCTTc                                                                                                                                          >  3:81242‑M1/142‑149 (MQ=255)               agcaCAGGCTGAGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCa                                                                                                                                   <  3:172386/149‑1 (MQ=255)                          aGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCg                                                                                                                          <  1:221800/147‑1 (MQ=255)                             tCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑g                                                                                                                    >  1:177733/1‑149 (MQ=255)                                aaccgccccgagcagcgcaacgcgctggacattcccaccctcaagcacctgcacgccttgcgcgacagccatgccgacgaccccgccgtacgcggggtggtgctgaccggtagcggccGCAgcttcggcgctgg                                                                                                                                  <  6:309762‑M1/16‑5 (MQ=255)                                    cACCGCCGTGGGCGGTGCCGTTGATGGCGGCGTATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCgg                                                                                                               >  1:36838/1‑148 (MQ=255)                                    cACCGCCGTGGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCgg                                                                                                               <  2:36838/147‑1 (MQ=255)                                     aCCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGgcgc                                                                                                            >  5:136674/1‑149 (MQ=255)                                       cGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCa                                                                                                          <  3:63846/149‑1 (MQ=255)                                            aCGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAgcg                                                                                                       >  4:137303/1‑147 (MQ=255)                                              ggcggTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGc                                                                                                                                 <  1:153370/120‑1 (MQ=255)                                              ggcggTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGc                                                                                                                                 >  2:153370/1‑120 (MQ=255)                                                 ggTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGgc                                                                                                              >  6:25350/1‑135 (MQ=255)                                                 ggTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGgc                                                                                                              <  5:25350/135‑1 (MQ=255)                                                      cgctggacaatcccaccctcaagcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCg                                                                                            >  1:255511‑M1/97‑149 (MQ=255)                                                       gTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGc                                                                                          >  6:14820/1‑149 (MQ=255)                                                       gTTGATGGCGGCG‑ATGGTAGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGc                                                                                          >  5:199501/1‑149 (MQ=255)                                                               cggcg‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCg                                                                                  >  2:249779/1‑149 (MQ=255)                                                                   g‑ATGGTGGGGTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCACAAGCTGCGGCCGCTACCGGTCa                                                                              <  7:194465/149‑1 (MQ=255)                                                                      tggtggGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGc                                                                            <  6:136674/149‑1 (MQ=255)                                                                            gcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAg                                                                                                    >  6:203536‑M1/75‑119 (MQ=255)                                                                            gcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAg                                                                                                    <  5:203536‑M1/45‑1 (MQ=255)                                                                                gTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCAGGGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGcaccaccac                                                                    <  1:226603/148‑1 (MQ=255)                                                                                 tCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCAcgcg                                                                 >  4:285725/1‑149 (MQ=255)                                                                                   gAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTa                                                               >  4:28025/1‑149 (MQ=255)                                                                                               gcgcAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGgtcgt                                                   >  6:107878/1‑149 (MQ=255)                                                                                                cgcAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGgtcgtc                                                  >  2:156790/1‑149 (MQ=255)                                                                                                           ggCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGt                                       >  2:200915/1‑149 (MQ=255)                                                                                                           ggCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGt                                       >  7:288176/1‑149 (MQ=255)                                                                                                            gCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTc                                      >  8:252091/1‑149 (MQ=255)                                                                                                               tGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGGCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAg                                   <  2:177733/149‑1 (MQ=255)                                                                                                                      tttCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCTGCATGGCTGTCGAGCAAGGCg                            >  8:12065/1‑149 (MQ=255)                                                                                                                              cAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGtt                     <  3:28025/148‑1 (MQ=255)                                                                                                                                   aTAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGa               <  7:161914/149‑1 (MQ=255)                                                                                                                                   aTAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGa               <  3:137303/149‑1 (MQ=255)                                                                                                                                      gCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAgg             <  3:285725/148‑1 (MQ=255)                                                                                                                                       cTTTCAAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTTAGGGt           >  7:215591/1‑149 (MQ=255)                                                                                                                                        tttCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTg          >  8:93698/1‑149 (MQ=255)                                                                                                                                        tttCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTg          >  5:285729/1‑149 (MQ=255)                                                                                                                                          tCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTgg         <  8:288176/148‑1 (MQ=255)                                                                                                                                          tCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTg          <  5:14820/147‑1 (MQ=255)                                                                                                                                           ccAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTggg        >  8:121791/1‑148 (MQ=255)                                                                                                                                                gTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTGGGAATGTc  <  1:156790/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                GATGCGCAGGTCGCAGCACAGGCTGAGGTCCATGCCACCGCCCACGGCGGTGCCGTTGATGGCGGCG‑ATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTTGCTTGAGGGTGGGAATGTC  >  NC_002947/4251652‑4251942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.