New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4251800 =	39 (0.800)	3 (0.070)	3/246	NT	7.9%	coding (233/795 nt)	PP_3726	enoyl‑CoA hydratase/isomerase family protein
	?	NC_002947	4251852 =	33 (0.720)					coding (181/795 nt)	PP_3726	enoyl‑CoA hydratase/isomerase family protein

CCGTTGATGGCGGCGATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGCCGGCTTCGA  >  NC_002947/4251704‑4251998                                                                                                                                                      |                                                                                                                                                    cgctggacaatcccaccctcaagcaactgcacgccttgctcgacagccatgccgacgaccccgccgtacgcgtggtggtgctgaccggtagcggccGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCg                                                                                                                                                     >  1:255511‑M1/97‑149 (MQ=255)   gTTGATGGCGGCGATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGc                                                                                                                                                   >  6:14820/1‑149 (MQ=255)   gTTGATGGCGGCGATGGTAGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGc                                                                                                                                                   >  5:199501/1‑149 (MQ=255)           cggcgATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCg                                                                                                                                           >  2:249779/1‑149 (MQ=255)               gATGGTGGGGTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCACAAGCTGCGGCCGCTACCGGTCa                                                                                                                                       <  7:194465/149‑1 (MQ=255)                 tggtggGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGc                                                                                                                                     <  6:136674/149‑1 (MQ=255)                           gTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCAGGGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGcaccaccac                                                                                                                             <  1:226603/148‑1 (MQ=255)                            tCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCAcgcg                                                                                                                          >  4:285725/1‑149 (MQ=255)                              gAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTa                                                                                                                        >  4:28025/1‑149 (MQ=255)                                          gcgcAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGgtcgt                                                                                                            >  6:107878/1‑149 (MQ=255)                                           cgcAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGgtcgtc                                                                                                           >  2:156790/1‑149 (MQ=255)                                                      ggCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGt                                                                                                >  2:200915/1‑149 (MQ=255)                                                      ggCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGt                                                                                                >  7:288176/1‑149 (MQ=255)                                                       gCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTc                                                                                               >  8:252091/1‑149 (MQ=255)                                                          tGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGGCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAg                                                                                            <  2:177733/149‑1 (MQ=255)                                                                 tttCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCTGCATGGCTGTCGAGCAAGGCg                                                                                     >  8:12065/1‑149 (MQ=255)                                                                         cAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGt‑t                                                                             <  3:28025/148‑1 (MQ=255)                                                                              aTAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGa                                                                       <  7:161914/149‑1 (MQ=255)                                                                              aTAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGa                                                                       <  3:137303/149‑1 (MQ=255)                                                                                 gCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAgg                                                                     <  3:285725/148‑1 (MQ=255)                                                                                  cTTTCAAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTTAGGGt                                                                   >  7:215591/1‑149 (MQ=255)                                                                                   tttCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTg                                                                  >  8:93698/1‑149 (MQ=255)                                                                                   tttCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTg                                                                  >  5:285729/1‑149 (MQ=255)                                                                                     tCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTgg                                                                 <  8:288176/148‑1 (MQ=255)                                                                                     tCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTg                                                                  <  5:14820/147‑1 (MQ=255)                                                                                      ccAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTggg                                                                >  8:121791/1‑148 (MQ=255)                                                                                           gTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTc                                                          <  1:156790/149‑1 (MQ=255)                                                                                                 cgcagcttctgcgctggcgccgacctggccgaatgggctgccgccgaagctgcGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGATTGTCCAgcg                                                     >  1:255511‑M2/54‑149 (MQ=255)                                                                                                         ctgcgctggcgccgacctggccgaatgggctgccgccgaagctgcGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGc                                                                           <  5:203536‑M2/74‑1 (MQ=255)                                                                                                         ctgcgctggcgccgacctggccgaatgggctgccgccgaagctgcGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGc                                                                           >  6:203536‑M2/46‑119 (MQ=255)                                                                                                             gcAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCAACGCgctggac                                        <  6:199501/149‑4 (MQ=255)                                                                                                                gCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCggg                                     <  6:285729/149‑1 (MQ=255)                                                                                                                 cccATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCGGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCgggg                                    >  5:102712/1‑149 (MQ=255)                                                                                                                  ccATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGc                                   <  7:252091/149‑1 (MQ=255)                                                                                                                    aTTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCgg                                 <  7:1848/149‑1 (MQ=255)                                                                                                                    aTTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCgg                                 >  4:290940/1‑149 (MQ=255)                                                                                                                    aTTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCgg                                 <  7:6363/149‑1 (MQ=255)                                                                                                                         gCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTAGCGCTGCTCGGGGCGCTTGAg                            >  8:236988/1‑149 (MQ=255)                                                                                                                          ccA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAgg                           <  2:209445/149‑1 (MQ=255)                                                                                                                                      ccagcgccgaagctgcGGCCGCTACCGGTCAGCACCACCCCGCGTACGGCGGGGTCGTCGGCATGGCTGTCGCGCAAGGCGTGCAGG‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGtt                               <  6:309762‑M2/118‑1 (MQ=255)                                                                                                                                           gcAGAAGCTGCGGCGGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGc           <  6:102712/149‑1 (MQ=255)                                                                                                                                            cAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAg                  <  1:7530/141‑1 (MQ=255)                                                                                                                                            cAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAg                  >  2:7530/1‑141 (MQ=255)                                                                                                                                             aGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGTCCGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGcc          <  1:249779/149‑1 (MQ=255)                                                                                                                                              gaagctgcGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGCCgg        >  3:81242‑M2/9‑149 (MQ=255)                                                                                                                                                   tgcGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGCCGGCTTc    >  2:252952‑M2/4‑148 (MQ=255)                                                                                                                                                     cGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGCCGGCTTCGa  <  7:93698‑M2/147‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CCGTTGATGGCGGCGATGGTGGGTTTGTCGAGGCTGTGCAGGCGCAGCATCAGGGCATGGGCAGTTTCGGTCCAGCCATAGCTTTCCAGGGTGCCGGCAGCTTCGGCGGCAGCCCATTCGGCCA‑GGTCGGCGCCAGCGCAGAAGCTGCGGCCGCTACCGGTCAGCACCACCACGCGTACGGCGGGGTCGTCGGCATGGCTGTCGAGCAAGGCGTGCAGT‑TGCTTGAGGGTGGGAATGTCCAGCGCGTTGCGCTGCTCGGGGCGGTTGAGGGTGATCCAGGCAACGCCGGCTTCGA  >  NC_002947/4251704‑4251998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.