New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4585056 =	47 (0.960)	3 (0.060)	3/252	NT	6.4%	coding (528/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4585084 =	43 (0.910)					coding (500/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

GCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAG  >  NC_002947/4584909‑4585202                                                                                                                                                    |                                                                                                                                                   gttttacctcgacgccggcgtggtaaaactggaactggaagaaggccgcttgatgctgggcaaaggcatcgagctgtgcagcggcgccctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcagg                                                                                                                                                   <  7:18048‑M1/2‑1 (MQ=255) gaagtaccacgccggcgtcgaggtaaaactggaactggaagaaggccgcttgatgctgggcaaaggcatcgagctgtgcagcggcgccctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcagg                                                                                                                                                   <  5:262801‑M1/2‑1 (MQ=255)  ccGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCA‑CCATGAGGCGGGCggtg                                                                                                                                                 <  2:114201/149‑1 (MQ=255)   cGTGACGCTGGGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCggtg                                                                                                                                                 <  4:119202/149‑1 (MQ=255)    gtaccacgccggcgtcgaggtaaaactggaactggaagaaggccgcttgatgctgggcaaaggcatcgagctgtgcagcggcgccctgcgcgacgcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaggtgg                                                                                                                                                <  2:276379‑M1/5‑1 (MQ=255)       aCGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATAAAGGGGGAAATCAGGACTGCGGGTAAGGTAGCTACGGTGTTCGGCTTCACCCATCAGGCGGGCGGAggtcg                                                                                                                                             >  8:84589/1‑149 (MQ=255)         gCTGCGGGTCGTCGGTAATCGAGCGCGGGATCAGGTCGTACCAGCTGGCGAACAATGCGGCCGGGGGGTCGACATCAAGGGTGAAATCAGGACTGCGGGTCAGGTAGGTACGGTGTTCGGCTTCACCCATGAGTCGGGCGGTggtcgg                                                                                                                                            <  7:84589/148‑1 (MQ=255)               ggTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCgaga                                                                                                                                     <  7:243369/149‑1 (MQ=255)               ggTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCgaga                                                                                                                                     <  3:42177/149‑1 (MQ=255)                   gtcgGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAaca                                                                                                                                 >  6:52944/1‑149 (MQ=255)                   gtcgGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAaca                                                                                                                                 >  5:195745/1‑149 (MQ=255)                      ggTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACg                                                                                                                               <  8:38294/148‑1 (MQ=255)                        tAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGc                                                                                                                             >  8:18048/1‑148 (MQ=255)                          aTCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCAc                                                                                                                          >  2:257891/1‑149 (MQ=255)                                  ctggAACAGCGCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCgaga                                                                                                                                     <  4:231086/128‑1 (MQ=255)                                   gggAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGatcatc                                                                                                                 >  5:268908/1‑149 (MQ=255)                                    ggAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCg                                                                                                                >  5:279160/1‑149 (MQ=255)                                     gAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCgg                                                                                                               <  5:143254/149‑1 (MQ=255)                                      gaagaaggccgcttgatgctgggcaaaggcatcgagctgtgcagcggcgccctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCgg                                                                                                               >  2:228002‑M1/111‑148 (MQ=255)                                         aGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACt                                                                                                           >  5:163544/1‑149 (MQ=255)                                          gCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACt                                                                                                           >  2:33559/1‑148 (MQ=255)                                          gCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTg                                                                                                          >  7:256364/1‑149 (MQ=255)                                                aCCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTg                                                                                                    >  5:313100/1‑149 (MQ=255)                                                      tGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAgg                                                                                              >  6:126116/1‑149 (MQ=255)                                                      tGGCGAACAATGCGGCCCGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAgg                                                                                              >  3:295982/1‑149 (MQ=255)                                                              aaTGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTg                                                                                      >  3:46885/1‑149 (MQ=255)                                                               aTGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGCACTGCGGGTCACGTAGCTACGGTGTTCGGCTTCACACATGAGGCGGGCGGTGGACGGGACGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGCCCAAGCGTCACTg                                                                                      >  1:106732/1‑148 (MQ=255)                                                                tGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGca                                                                                    <  6:279160/149‑1 (MQ=255)                                                                  cGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCGATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGcaca                                                                                  <  6:313100/149‑1 (MQ=255)                                                                     ccGGGCGGTCGCAATCAAGGGTGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGcc                                                                               <  8:256364/149‑1 (MQ=255)                                                                               gACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCt                                                                     <  4:296665/149‑1 (MQ=255)                                                                                     aaGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCgcgc                                                                <  6:268908/148‑1 (MQ=255)                                                                                       gggggAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAg                                                                                               <  2:73869/115‑1 (MQ=255)                                                                                       gggggAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAg                                                                                               >  1:73869/1‑115 (MQ=255)                                                                                         ctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTg                                                                                                                       >  3:165323‑M1/60‑89 (MQ=255)                                                                                         ctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTg                                                                                                                       <  4:165323‑M1/30‑1 (MQ=255)                                                                                                 aGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTg                                                    >  6:262801/1‑148 (MQ=255)                                                                                                 aGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTg                                                    <  4:295982/148‑1 (MQ=255)                                                                                                  ggACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAAGACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGca                                                  >  4:256288/1‑149 (MQ=255)                                                                                                   gACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTcg                                                                   <  3:45836/131‑1 (MQ=255)                                                                                                   gACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTcg                                                                   >  4:45836/1‑131 (MQ=255)                                                                                                              aGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGACGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGcc                                      >  7:274616/1‑149 (MQ=255)                                                                                                                gTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGTGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCtt                                    <  5:52944/149‑1 (MQ=255)                                                                                                                gTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCAATGCCtt                                    <  6:163544/149‑1 (MQ=255)                                                                                                                     tACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGccc                               >  7:142687/1‑149 (MQ=255)                                                                                                                            ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCt                                             >  3:117116/1‑128 (MQ=255)                                                                                                                            ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCt                                             <  4:117116/128‑1 (MQ=255)                                                                                                                            ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATc                         <  5:126116/148‑1 (MQ=255)                                                                                                                            ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATc                         <  4:46885/148‑1 (MQ=255)                                                                                                                              cGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCaa                       <  1:33559/148‑1 (MQ=255)                                                                                                                                  ttCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGc                  >  7:219823/1‑149 (MQ=255)                                                                                                                                       ccATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCcttct             >  5:279576/1‑149 (MQ=255)                                                                                                                                       ccATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCcttct             >  2:101118/1‑149 (MQ=255)                                                                                                                                              tcggggggTGGGCGGGTCGTGAAACTCGGCGAAGTGATCTTCGGTACTGAGCGTGTCCAGGCTGCTATGCACTGCCTCGTGCGCCTCGGGCAGGGCGGCGGTGCACAGCTCGATGGCTTTGCCGAGCATCAAGCGGCCTTCttccagtt      <  2:106732/148‑1 (MQ=255)                                                                                                                                              gcgggcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCt                                                     >  6:290218/1‑102 (MQ=255)                                                                                                                                              gcgggcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCt                                                     <  5:290218/102‑1 (MQ=255)                                                                                                                                                  gcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCttccagttccag  >  7:37090/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAG  >  NC_002947/4584909‑4585202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.