New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4585056 =	47 (0.960)	3 (0.060)	3/252	NT	6.4%	coding (528/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4585084 =	43 (0.910)					coding (500/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

GGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTT  >  NC_002947/4584943‑4585232                                                                                                                                              |                                                                                                                                                     gggAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGatcatc                                                                                                                                               >  5:268908/1‑149 (MQ=255)  ggAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCg                                                                                                                                              >  5:279160/1‑149 (MQ=255)   gAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCgg                                                                                                                                             <  5:143254/149‑1 (MQ=255)    gaagaaggccgcttgatgctgggcaaaggcatcgagctgtgcagcggcgccctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCgg                                                                                                                                             >  2:228002‑M1/111‑148 (MQ=255)       aGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACt                                                                                                                                         >  5:163544/1‑149 (MQ=255)        gCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACt                                                                                                                                         >  2:33559/1‑148 (MQ=255)        gCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTg                                                                                                                                        >  7:256364/1‑149 (MQ=255)              aCCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTg                                                                                                                                  >  5:313100/1‑149 (MQ=255)                    tGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAgg                                                                                                                            >  6:126116/1‑149 (MQ=255)                    tGGCGAACAATGCGGCCCGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAgg                                                                                                                            >  3:295982/1‑149 (MQ=255)                            aaTGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTg                                                                                                                    >  3:46885/1‑149 (MQ=255)                             aTGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGCACTGCGGGTCACGTAGCTACGGTGTTCGGCTTCACACATGAGGCGGGCGGTGGACGGGACGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGCCCAAGCGTCACTg                                                                                                                    >  1:106732/1‑148 (MQ=255)                              tGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGca                                                                                                                  <  6:279160/149‑1 (MQ=255)                                cGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCGATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGcaca                                                                                                                <  6:313100/149‑1 (MQ=255)                                   ccGGGCGGTCGCAATCAAGGGTGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGcc                                                                                                             <  8:256364/149‑1 (MQ=255)                                             gACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCt                                                                                                   <  4:296665/149‑1 (MQ=255)                                                   aaGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCgcgc                                                                                              <  6:268908/148‑1 (MQ=255)                                                     gggggAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAg                                                                                                                             >  1:73869/1‑115 (MQ=255)                                                     gggggAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAg                                                                                                                             <  2:73869/115‑1 (MQ=255)                                                       ctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTg                                                                                                                                                     >  3:165323‑M1/60‑89 (MQ=255)                                                       ctgcgcgaggcgctcgaggctgtgcagagccgcctggccacgctcagtaccgatgatcaGGTGGTCGGGTCGAGAAACACGGCCACCTg                                                                                                                                                     <  4:165323‑M1/30‑1 (MQ=255)                                                               aGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTg                                                                                  >  6:262801/1‑148 (MQ=255)                                                               aGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTg                                                                                  <  4:295982/148‑1 (MQ=255)                                                                ggACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAAGACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGca                                                                                >  4:256288/1‑149 (MQ=255)                                                                 gACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTcg                                                                                                 >  4:45836/1‑131 (MQ=255)                                                                 gACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTcg                                                                                                 <  3:45836/131‑1 (MQ=255)                                                                            aGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGACGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGcc                                                                    >  7:274616/1‑149 (MQ=255)                                                                              gTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGTGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCtt                                                                  <  5:52944/149‑1 (MQ=255)                                                                              gTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCAATGCCtt                                                                  <  6:163544/149‑1 (MQ=255)                                                                                   tACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGccc                                                             >  7:142687/1‑149 (MQ=255)                                                                                          ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCt                                                                           >  3:117116/1‑128 (MQ=255)                                                                                          ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCt                                                                           <  4:117116/128‑1 (MQ=255)                                                                                          ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATc                                                       <  5:126116/148‑1 (MQ=255)                                                                                          ttCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATc                                                       <  4:46885/148‑1 (MQ=255)                                                                                            cGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCaa                                                     <  1:33559/148‑1 (MQ=255)                                                                                                ttCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGc                                                >  7:219823/1‑149 (MQ=255)                                                                                                     ccATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCcttct                                           >  5:279576/1‑149 (MQ=255)                                                                                                     ccATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCcttct                                           >  2:101118/1‑149 (MQ=255)                                                                                                        ccgatgatcaggtggccgtgtttctcgacccgaccaccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCttcttc                                         >  2:228002‑M2/39‑148 (MQ=255)                                                                                                            tcggggggTGGGCGGGTCGTGAAACTCGGCGAAGTGATCTTCGGTACTGAGCGTGTCCAGGCTGCTATGCACTGCCTCGTGCGCCTCGGGCAGGGCGGCGGTGCACAGCTCGATGGCTTTGCCGAGCATCAAGCGGCCTTCttccagtt                                    <  2:106732/148‑1 (MQ=255)                                                                                                            gcgggcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCt                                                                                   >  6:290218/1‑102 (MQ=255)                                                                                                            gcgggcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCt                                                                                   <  5:290218/102‑1 (MQ=255)                                                                                                                gcggTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCttccagttccag                                >  7:37090/1‑149 (MQ=255)                                                                                                                caggtggccgtgtttctcgacccgaccaccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAg                                                                                            >  3:165323‑M2/31‑89 (MQ=255)                                                                                                                caggtggccgtgtttctcgacccgaccaccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAg                                                                                            <  4:165323‑M2/59‑1 (MQ=255)                                                                                                                          ggtcgAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCttccagttcca                                 >  1:51681/1‑138 (MQ=255)                                                                                                                          ggtcgAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCttccagttcca                                 <  2:51681/138‑1 (MQ=255)                                                                                                                                gaAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTACTTCCAGTTCCAGTTTTAACTCGACGCCg                >  1:276379/1‑149 (MQ=255)                                                                                                                                  aaCACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGc              >  5:306052/1‑149 (MQ=255)                                                                                                                                    cacGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGt            >  3:193259/1‑149 (MQ=255)                                                                                                                                        gCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTa        <  6:195745/149‑1 (MQ=255)                                                                                                                                        gCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTa        <  8:37090/149‑1 (MQ=255)                                                                                                                                         ccaccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCGTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTAc       <  2:276379‑M2/144‑1 (MQ=255)                                                                                                                                            ccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTActtc    <  5:262801‑M2/147‑1 (MQ=255)                                                                                                                                            ccTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCACGCCGGCGTCGaggtaaaac    <  7:18048‑M2/147‑5 (MQ=255)                                                                                                                                              tGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTActtctt  >  6:122066/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     GGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGTCAGGTAGCTACGGTGTTCGGCTTCACCCATGAGGCGGGCGGTGGTCGGGTCGAGAAACACGGCCACCTGATCATCGGTACTGAGCGTGGCCAGGCGGCTCTGCACAGCCTCGAGCGCCTCGCGCAGGGCGCCGCTGCACAGCTCGATGCCTTTGCCCAGCATCAAGCGGCCTTCTTCCAGTTCCAGTTTTACCTCGACGCCGGCGTGGTACTTCTT  >  NC_002947/4584943‑4585232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.