New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5718380 = | 53 (1.080) | 7 (0.150) | 5/252 | NT | 13.0% | coding (1079/1917 nt) | PP_5020 | methyl‑accepting chemotaxis protein |
? | NC_002947 | 5718426 = | 43 (0.910) | coding (1125/1917 nt) | PP_5020 | methyl‑accepting chemotaxis protein |
ATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGC > NC_002947/5718232‑5718521 | atcatcATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGAt < 8:79920/149‑1 (MQ=255) atcatcATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACGGAt > 7:206436/1‑149 (MQ=255) ggcttccgaagcctgttcggcattgcgtgccacttcgtgcacggtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTcggcgg < 8:13594‑M1/7‑1 (MQ=255) tCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCa > 7:234867/1‑149 (MQ=255) ccGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGAt > 7:162846/1‑140 (MQ=255) ccGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGAt < 8:162846/140‑1 (MQ=255) cGCTGCGCCAAACGCTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATcggcg > 6:214286/1‑144 (MQ=255) cGCTGCGCCAAACGCTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATcggcg < 5:214286/144‑1 (MQ=255) cAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATgg > 3:109031/1‑149 (MQ=255) tgttcggcattgcgtgccacttcgtgcacggtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGc < 7:162845‑M1/20‑1 (MQ=255) aaaCACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGa < 2:19637/145‑1 (MQ=255) aaaCACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGa > 1:19637/1‑145 (MQ=255) acacTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGACTGCAGGTACAACGCCGCGTCGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCg < 2:209776/148‑1 (MQ=255) gcAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGc < 8:234867/149‑1 (MQ=255) cacttcgtgcacggtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAg < 6:40514‑M1/37‑1 (MQ=255) gtgtGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATc > 4:139139/1‑140 (MQ=255) gtgtGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATc < 3:139139/140‑1 (MQ=255) tgtgGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAg > 1:49318/1‑144 (MQ=255) tgtgGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAg < 2:49318/144‑1 (MQ=255) tgtgGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTg < 4:280674/149‑1 (MQ=255) gCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCga < 3:231188/149‑1 (MQ=255) ggtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgagga > 7:13594‑M1/101‑149 (MQ=255) ggtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgagga > 5:40514‑M1/101‑149 (MQ=255) aGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgagga < 4:109031/149‑1 (MQ=255) gtggcagtcatctggttcatcgcagtcgccacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgaggag > 8:162845‑M1/100‑149 (MQ=255) gTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgaggag > 7:85558/1‑149 (MQ=255) tGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCga < 2:3990/144‑1 (MQ=255) tGGAGACCTGACCCAGAGCCTGCAGGGACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCga > 1:3990/1‑144 (MQ=255) aCCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGt < 1:237510/149‑1 (MQ=255) aCCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGt > 5:70015/1‑149 (MQ=255) ccAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGa < 3:51215/149‑1 (MQ=255) ccAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGa < 6:70015/149‑1 (MQ=255) gagCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGacag < 1:16183/149‑1 (MQ=255) gagCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGacag < 1:11411/149‑1 (MQ=255) ccTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGt < 2:53406/134‑1 (MQ=255) ccTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGt > 1:53406/1‑134 (MQ=255) ccTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGacagaa > 5:202805/1‑148 (MQ=255) cAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGacagaacag < 7:163599/147‑1 (MQ=255) cAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGAc < 8:85558/149‑1 (MQ=255) cacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgaggag > 5:29955‑M1/71‑120 (MQ=255) cacctggtcggtttcgaccttctgattgttgaccccggcgctggtctgttctgtcaccgccgacagctccTCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCgaggag < 6:29955‑M1/50‑1 (MQ=255) gacgaACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTca > 7:124625/1‑148 (MQ=255) gaACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAg < 3:222587/87‑1 (MQ=255) gaACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAg > 4:222587/1‑87 (MQ=255) gCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAg > 5:101629/1‑149 (MQ=255) ccAATTGCAGGCCAGAATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCGGCCCTCCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGTGGGCAACAATCAGCAgg > 4:158304/1‑149 (MQ=255) aGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAAcc > 2:64713/1‑149 (MQ=255) caaGCATGCATCGCTTGACCCAAGGCTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGGCAGCGCTGCCGAGGAGCTGTCGGCGGTGACTGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGAc < 8:206436/147‑1 (MQ=255) atgcatCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGt > 1:96047/1‑149 (MQ=255) tgcatCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTg > 6:157699/1‑149 (MQ=255) catCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGc < 5:157699/149‑1 (MQ=255) cATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTg > 5:20537/1‑149 (MQ=255) aTGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGc > 7:33487/1‑149 (MQ=255) aCCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGa < 1:64713/148‑1 (MQ=255) cAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGaa > 2:111734/1‑149 (MQ=255) aaGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAAc < 1:111734/149‑1 (MQ=255) ggTTTGCGTGAACTGATCGTCGGCATTGCCGATGGCGTGACGCAGTTCGCCGGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCa < 3:158304/149‑1 (MQ=255) gTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCggg > 2:67718/1‑98 (MQ=255) gTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCggg < 1:67718/98‑1 (MQ=255) tttGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAAc > 7:68369/1‑145 (MQ=255) gTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACt > 1:9342/1‑149 (MQ=255) tGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTg < 6:20537/149‑1 (MQ=255) gAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCgg < 6:292196/89‑1 (MQ=255) gAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCgg > 5:292196/1‑89 (MQ=255) aaCTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGc > 8:263800/1‑148 (MQ=255) | ATCATCATTCCGCTGCGCCAAACACTGCGCGCCGCAGAGCGTGTGGCCAGTGGAGACCTGACCCAGAGCCTGCAGGTACAACGCCGCGACGAACTGGGCCAATTGCAGGCCAGCATGCATCGCATGACCCAAGGTTTGCGTGAACTGATCGGCGGCATTGGCGATGGCGTGACGCAGATCGCCAGCGCTGCCGAGGAGCTGTCGGCGGTGACAGAACAGACCAGCGCCGGGGTCAACAATCAGAAGGTCGAAACCGACCAGGTGGCGACTGCGATGAACCAGATGACTGC > NC_002947/5718232‑5718521 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |