New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5944028 =	45 (0.920)	3 (0.060)	3/254	NT	6.3%	coding (207/558 nt)	PP_5211	ChaC‑related protein
	?	NC_002947	5944071 =	45 (0.950)					coding (164/558 nt)	PP_5211	ChaC‑related protein

AGCCCAAGGCCTGCACCTTGCTACCATCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGC  >  NC_002947/5943880‑5944166                                                                                                                                                     |                                                                                                                                           ccaggcaccagggcgggcctgtgtggctgtttgcctatgcctcgttgatctggcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtccaatgaacatcgcggtaccccg                                                                                                                                            <  6:269276‑M1/1‑1 (MQ=255)  caggcaccagggcgggcctgtgtggctgtttgcctatgcctcgttgatctggcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccgg                                                                                                                                           >  4:246228‑M1/148‑149 (MQ=255)     cAAGGCCTGCACCTTGCTACCATCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCATGAac                                                                                                                                        >  6:129851/1‑149 (MQ=255)               aCCTTGCTACCATCACCGAGGCGGCTGTTGAGCCAGTGCGTCCGGTATGCGGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCGAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTc                                                                                                                              <  6:145457/149‑1 (MQ=255)                    gCTACCATCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAg                                                                                                                           <  5:17768/147‑1 (MQ=255)                        ccATCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCaaa                                                                                                                     <  1:19093/149‑1 (MQ=255)                          aTCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAaca                                                                                                                   >  6:73159/1‑149 (MQ=255)                          aTCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAaca                                                                                                                   >  7:83923/1‑149 (MQ=255)                              cccAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAg                                                                                                               >  2:289627/1‑149 (MQ=255)                               ccAGGCGGCTGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAgg                                                                                                              <  1:160913/149‑1 (MQ=255)                                cAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAac                                                                                                                    <  4:193907/142‑1 (MQ=255)                                cAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAac                                                                                                                    >  3:193907/1‑142 (MQ=255)                                     ggcAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGc                                                                                                        <  1:122510/149‑1 (MQ=255)                                          ttGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGACTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAAACACCGCGGTCAAGGCCAAACACCAGGCCGGGCGTTTc                                                                                                   >  5:144782/1‑149 (MQ=255)                                               gatctggcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCggg                                                                                               >  1:134902‑M1/103‑148 (MQ=255)                                                    gcgcccggagtgcaattcggtggagcgccagcgcggcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCg                                                                                                 <  1:40970‑M1/44‑1 (MQ=255)                                                     gcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCg                                                                                                 >  2:40970‑M1/97‑140 (MQ=255)                                                      ggCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACcgc                                                                                        >  2:102111/1‑148 (MQ=255)                                                        ccGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAac                                                                                                                    <  2:111073/118‑1 (MQ=255)                                                        ccGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAac                                                                                                                    >  1:111073/1‑118 (MQ=255)                                                                ccGGTTAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGGTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATgg                                                                             <  7:229731/149‑1 (MQ=255)                                                                ccGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATgg                                                                             <  5:129851/149‑1 (MQ=255)                                                                ccGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATg                                                                              <  1:293300/148‑1 (MQ=255)                                                                     tAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAcc                                                                         <  8:37887/148‑1 (MQ=255)                                                                        ggCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAg                                                                     >  7:133564/1‑149 (MQ=255)                                                                             ctcGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTAc                                                                 >  7:32131/1‑148 (MQ=255)                                                                                gcgTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGc                                                             >  3:15655/1‑149 (MQ=255)                                                                                  gTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCa                                                           <  8:133564/149‑1 (MQ=255)                                                                                          aGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCgg                                                                                                                                <  2:146220/72‑1 (MQ=255)                                                                                          aGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCgg                                                                                                                                >  1:146220/1‑72 (MQ=255)                                                                                           gggCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAg                                                  <  8:83923/149‑1 (MQ=255)                                                                                                aTCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCAGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATg                                             >  2:256332/1‑149 (MQ=255)                                                                                                    gTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTAcc                                         >  3:56586/1‑149 (MQ=255)                                                                                                     tGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAc                                                                          <  8:244942/115‑1 (MQ=255)                                                                                                     tGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAc                                                                          >  7:244942/1‑115 (MQ=255)                                                                                                       aGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGTTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCAGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCcgc                                      <  1:256332/149‑1 (MQ=255)                                                                                                                  ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGtt                                                                                  >  8:252791/1‑94 (MQ=255)                                                                                                                  ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGtt                                                                                  <  7:252791/94‑1 (MQ=255)                                                                                                                  ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGgcg                           >  1:178020/1‑149 (MQ=255)                                                                                                                           tCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGA‑CACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGgcgc                          >  3:175188/1‑140 (MQ=255)                                                                                                                           tCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGA‑CACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGgcgc                          <  4:175188/140‑1 (MQ=255)                                                                                                                             cAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGaa                 <  4:56586/148‑1 (MQ=255)                                                                                                                              aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAAtt               >  7:129707/1‑149 (MQ=255)                                                                                                                              aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAAtt               >  8:180671/1‑149 (MQ=255)                                                                                                                              aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAAtt               <  5:73159/149‑1 (MQ=255)                                                                                                                               gCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTg              <  1:289627/149‑1 (MQ=255)                                                                                                                                 cGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCa            >  8:267093/1‑149 (MQ=255)                                                                                                                                 cGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCa            >  4:87449/1‑149 (MQ=255)                                                                                                                                     aGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCACTcc        >  7:65513/1‑149 (MQ=255)                                                                                                                                         aaaGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCACTCCGGgc    >  2:222588/1‑149 (MQ=255)                                                                                                                                           aGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCACTCCGGgcgc  <  3:87449/149‑1 (MQ=255)                                                                                                                                                 tGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACgg                                                        <  7:199453/89‑1 (MQ=255)                                                                                                                                                 tGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACgg                                                        >  8:199453/1‑89 (MQ=255)                                                                                                                                                     |                                                                                                                                           AGCCCAAGGCCTGCACCTTGCTACCATCACCCAGGCGGCAGTTGAGCCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGC  >  NC_002947/5943880‑5944166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.