New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5944028 =	45 (0.920)	3 (0.060)	3/254	NT	6.3%	coding (207/558 nt)	PP_5211	ChaC‑related protein
	?	NC_002947	5944071 =	45 (0.950)					coding (164/558 nt)	PP_5211	ChaC‑related protein

CCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGGCCCGCCCTGGTGCCTGG  >  NC_002947/5943926‑5944218                                                                                                                                                  |                                                                                                                                                     gatctggcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCggg                                                                                                                                                    >  1:134902‑M1/103‑148 (MQ=255)      gcgcccggagtgcaattcggtggagcgccagcgcggcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCg                                                                                                                                                      <  1:40970‑M1/44‑1 (MQ=255)       gcgcccggagtgcaattcggtggagcgccagcgcgcgcgggtacatggctatcaccgtggcttgtacctgtggtcccatgaacatcgcggtaccccGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCg                                                                                                                                                      >  2:40970‑M1/97‑140 (MQ=255)        ggCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACcgc                                                                                                                                             >  2:102111/1‑148 (MQ=255)                  ccGGTTAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGGTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATgg                                                                                                                                  <  7:229731/149‑1 (MQ=255)                  ccGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATgg                                                                                                                                  <  5:129851/149‑1 (MQ=255)                  ccGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATg                                                                                                                                   <  1:293300/148‑1 (MQ=255)                       tAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAcc                                                                                                                              <  8:37887/148‑1 (MQ=255)                          ggCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAg                                                                                                                          >  7:133564/1‑149 (MQ=255)                               ctcGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTAc                                                                                                                      >  7:32131/1‑148 (MQ=255)                                  gcgTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGc                                                                                                                  >  3:15655/1‑149 (MQ=255)                                    gTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCa                                                                                                                <  8:133564/149‑1 (MQ=255)                                             gggCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAg                                                                                                       <  8:83923/149‑1 (MQ=255)                                                  aTCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCAGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATg                                                                                                  >  2:256332/1‑149 (MQ=255)                                                      gTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTAcc                                                                                              >  3:56586/1‑149 (MQ=255)                                                       tGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAc                                                                                                                               <  8:244942/115‑1 (MQ=255)                                                       tGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGAc                                                                                                                               >  7:244942/1‑115 (MQ=255)                                                         aGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGTTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCAGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCcgc                                                                                           <  1:256332/149‑1 (MQ=255)                                                                    ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGtt                                                                                                                                       >  8:252791/1‑94 (MQ=255)                                                                    ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGtt                                                                                                                                       <  7:252791/94‑1 (MQ=255)                                                                    ttGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGgcg                                                                               >  1:178020/1‑149 (MQ=255)                                                                             tCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGA‑CACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGgcgc                                                                              <  4:175188/140‑1 (MQ=255)                                                                             tCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGA‑CACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGgcgc                                                                              >  3:175188/1‑140 (MQ=255)                                                                               cAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGaa                                                                     <  4:56586/148‑1 (MQ=255)                                                                                aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAAtt                                                                   >  8:180671/1‑149 (MQ=255)                                                                                aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAAtt                                                                   >  7:129707/1‑149 (MQ=255)                                                                                aGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAAtt                                                                   <  5:73159/149‑1 (MQ=255)                                                                                 gCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTg                                                                  <  1:289627/149‑1 (MQ=255)                                                                                   cGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCa                                                                >  8:267093/1‑149 (MQ=255)                                                                                   cGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCa                                                                >  4:87449/1‑149 (MQ=255)                                                                                       aGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTcc                                                            >  7:65513/1‑149 (MQ=255)                                                                                           aaaGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGgc                                                        >  2:222588/1‑149 (MQ=255)                                                                                             aGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGgcgc                                                      <  3:87449/149‑1 (MQ=255)                                                                                                   tGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACgg                                                                                                             >  8:199453/1‑89 (MQ=255)                                                                                                   tGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACgg                                                                                                             <  7:199453/89‑1 (MQ=255)                                                                                                    cccggaaacgcccggcctggtgtttggcctggaccgcggtggttccGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATc                                                >  1:134902‑M2/47‑148 (MQ=255)                                                                                                      cggaaacgcccggcctggtgtttggcctggaccgcggtggttccGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCGCCGCGCTGGCGCTCCACCGAATTGCACTCCGGgcgc                                                      <  1:40970‑M2/97‑1 (MQ=255)                                                                                                      cggaaacgcccggcctggtgtttggcctggaccgcggtggttccGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGgcgc                                                      >  2:40970‑M2/45‑140 (MQ=255)                                                                                                         AACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAg                                          >  7:180671‑M1/1‑149 (MQ=255)                                                                                                                   gTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCaa                                <  7:267093/149‑1 (MQ=255)                                                                                                                    tCCAGGCCAAACACCAGCCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGGGATAGCCATGTACCCCCG‑CGCGCTGGCGCACCCCCGAATTCCACTCCGGCCGCCAGATCAACGAGGCATAGGCaaa                               >  6:37650/1‑149 (MQ=255)                                                                                                                      cAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATTGGCAAAc                              <  8:129707/148‑1 (MQ=255)                                                                                                                      cAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAAc                              <  4:15655/148‑1 (MQ=255)                                                                                                                        ggCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGc                           >  1:66144/1‑149 (MQ=255)                                                                                                                        ggCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGc                           >  2:208425/1‑149 (MQ=255)                                                                                                                           cAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGACTTGCACTCCGGGCGCCAGATCAACGa                                           >  5:71273/1‑130 (MQ=255)                                                                                                                           cAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGa                                           <  6:71273/130‑1 (MQ=255)                                                                                                                           cAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCaa                                >  5:55517/1‑141 (MQ=255)                                                                                                                           cAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCaa                                <  6:55517/141‑1 (MQ=255)                                                                                                                               cacCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAg                    <  2:178020/149‑1 (MQ=255)                                                                                                                                 ccAGGCCGGGCGTTTCCGTGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCT‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGTCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGgc                  <  6:144782/149‑1 (MQ=255)                                                                                                                                  cAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGgcc                 >  8:16313/1‑149 (MQ=255)                                                                                                                                                ccGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGGCCCGCCCTGGTGCCTg   >  4:246228‑M2/3‑149 (MQ=255)                                                                                                                                                 cGGGGTACCGCGATGTTCATTGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGGCCCGCCCTGGTGCCTgg  <  6:269276‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CCAGTGCGGCCGGTATGCCGGATAGGGCATCTCGCGTTGCCATAGGGCCATCAGTGAGTCGTCCAGGTTGCGTTCATCCAGCCGGTAGGCAAAGCCGCTGCAGGAACCACCGCGGTCCAGGCCAAACACCAGGCCGGGCGTTTCCGGGGTACCGCGATGTTCATGGGACCACAGGTACAAGCCACGGTGATAGCCATGTACCCGCG‑CGCGCTGGCGCTCCACCGAATTGCACTCCGGGCGCCAGATCAACGAGGCATAGGCAAACAGCCACACAGGCCCGCCCTGGTGCCTGG  >  NC_002947/5943926‑5944218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.