New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5945194 =	52 (1.060)	4 (0.080)	4/254	NT	8.3%	coding (349/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase
	?	NC_002947	5945235 =	38 (0.800)					coding (308/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase

CACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCG  >  NC_002947/5945051‑5945336                                                                                                                                                 |                                                                                                                                               cACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgca                                                                                                                                            <  3:239466/148‑1 (MQ=255)     gCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcg                                                                                                                                        >  5:115941/1‑148 (MQ=255)                aCGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggc                                                                                                                                         >  7:230098/1‑136 (MQ=255)                aCGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggc                                                                                                                                         <  8:230098/136‑1 (MQ=255)                     ccAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGc                                                                                                                       <  2:128106/149‑1 (MQ=255)                     ccAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGc                                                                                                                       >  4:247609/1‑149 (MQ=255)                      cAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAGAGGCTGCCTGCTTGCCGCCCTCCCGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGc                                                                                                                       >  1:79535/1‑149 (MQ=255)                          ataTGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGAc                                                                                                                  <  1:178149/147‑1 (MQ=255)                             ttcacctgcattgccgaaccgctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGt                                                                                                                <  3:128134‑M1/33‑1 (MQ=255)                                  cTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcag                                                                                                                                           >  3:255846/1‑116 (MQ=255)                                  cTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcag                                                                                                                                           <  4:255846/116‑1 (MQ=255)                                  cTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTcgccgc                                                                                                          >  7:228181/1‑149 (MQ=255)                                  cTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTcgccgc                                                                                                          >  6:101130/1‑149 (MQ=255)                                   tCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCgccgcc                                                                                                         >  5:84152/1‑149 (MQ=255)                                    ccAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCgccgcc                                                                                                         >  4:219869/1‑148 (MQ=255)                                        ttCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGt                                                                                                    >  8:273524/1‑149 (MQ=255)                                            cGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGAc                                                                                                <  2:10421/149‑1 (MQ=255)                                             aaccgctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGAc                                                                                                >  4:128134‑M1/101‑149 (MQ=255)                                               ccGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGca                                                                                             <  5:41391/149‑1 (MQ=255)                                                  ctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGa                                                                                                 <  5:116966‑M1/48‑1 (MQ=255)                                                  ctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGa                                                                                                 >  6:116966‑M1/96‑143 (MQ=255)                                                       tgGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGa                                                                                     >  2:112932/1‑149 (MQ=255)                                                                      cGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCt                                                                      <  5:201830/149‑1 (MQ=255)                                                                                  cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                  <  8:236880/142‑1 (MQ=255)                                                                                  cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                  >  7:236880/1‑142 (MQ=255)                                                                                  cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                            <  6:84152/148‑1 (MQ=255)                                                                                     gcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGt                                                        >  7:75673/1‑149 (MQ=255)                                                                                      cTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGtt                                                       >  8:98505/1‑149 (MQ=255)                                                                                         gccgccCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgcaggc                                                                                                                               >  5:49733/1‑74 (MQ=255)                                                                                         gccgccCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgcaggc                                                                                                                               <  6:49733/74‑1 (MQ=255)                                                                                           cgccCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGcc                                                   >  6:70249/1‑148 (MQ=255)                                                                                             cccTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCaa                                                <  3:247609/149‑1 (MQ=255)                                                                                                  aCGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                           <  7:273524/149‑1 (MQ=255)                                                                                                  aCGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                           <  3:219869/149‑1 (MQ=255)                                                                                                   cGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg                                          <  2:79535/149‑1 (MQ=255)                                                                                                      tCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGca                                        >  5:309871/1‑148 (MQ=255)                                                                                                            atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                  >  8:279089/1‑116 (MQ=255)                                                                                                            atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGt                                  <  6:115941/148‑1 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGc                                                                                                                       <  6:181181/62‑1 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGc                                                                                                                       >  5:181181/1‑62 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc                                >  5:173996/1‑149 (MQ=255)                                                                                                              caGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc                                >  6:2148/1‑148 (MQ=255)                                                                                                              caGGTAATGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCACGCACACCGTcc                                >  6:6456/1‑148 (MQ=255)                                                                                                                    ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                          <  1:112932/148‑1 (MQ=255)                                                                                                                    ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                          <  8:75673/148‑1 (MQ=255)                                                                                                                      gCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAac                       >  3:137541/1‑149 (MQ=255)                                                                                                                        cccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAacac                     >  3:231453/1‑149 (MQ=255)                                                                                                                         ccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACg                    >  3:235913/1‑149 (MQ=255)                                                                                                                          cgcgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                          <  3:30275/142‑1 (MQ=255)                                                                                                                          cgcgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                          >  4:30275/1‑142 (MQ=255)                                                                                                                            cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAg                 <  4:231453/149‑1 (MQ=255)                                                                                                                                gTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcct             <  4:235913/149‑1 (MQ=255)                                                                                                                                 tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc            <  8:228181/149‑1 (MQ=255)                                                                                                                                     gcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGc        >  7:51360/1‑149 (MQ=255)                                                                                                                                      cAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                            <  7:55619/128‑1 (MQ=255)                                                                                                                                      cAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                            >  8:55619/1‑128 (MQ=255)                                                                                                                                           gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCg  >  8:149792/1‑149 (MQ=255)                                                                                                                                                 CGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg       <  6:149284‑M1/138‑1 (MQ=255)                                                                                                                                                 CGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg       >  5:149284‑M1/1‑138 (MQ=255)                                                                                                                                                 |                                                                                                                                               CACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGA‑AGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCG  >  NC_002947/5945051‑5945336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.