New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5945194 =	52 (1.060)	4 (0.080)	4/254	NT	8.3%	coding (349/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase
	?	NC_002947	5945235 =	38 (0.800)					coding (308/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase

TTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCA  >  NC_002947/5945090‑5945378                                                                                                                                                  |                                                                                                                                                ttCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGt                                                                                                                                              >  8:273524/1‑149 (MQ=255)     cGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGAc                                                                                                                                          <  2:10421/149‑1 (MQ=255)     aaccgctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGAc                                                                                                                                          >  4:128134‑M1/101‑149 (MQ=255)        ccGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGca                                                                                                                                       <  5:41391/149‑1 (MQ=255)          ctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGa                                                                                                                                           >  6:116966‑M1/96‑143 (MQ=255)          ctggaggactgcgtgttgctctgggacggtgtgcttgccttgggcgaactgccagtgcgcaagctggcgtgcagcgtcagtgagtgcgtcgacgtCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGa                                                                                                                                           <  5:116966‑M1/48‑1 (MQ=255)                tgGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGa                                                                                                                               >  2:112932/1‑149 (MQ=255)                               cGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCt                                                                                                                <  5:201830/149‑1 (MQ=255)                                          cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                                                            <  8:236880/142‑1 (MQ=255)                                          cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                                                            >  7:236880/1‑142 (MQ=255)                                          cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                                                                      <  6:84152/148‑1 (MQ=255)                                             gcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGt                                                                                                  >  7:75673/1‑149 (MQ=255)                                              cTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGtt                                                                                                 >  8:98505/1‑149 (MQ=255)                                                   cgccCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGcc                                                                                             >  6:70249/1‑148 (MQ=255)                                                     cccTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCaa                                                                                          <  3:247609/149‑1 (MQ=255)                                                          aCGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                                                                     <  7:273524/149‑1 (MQ=255)                                                          aCGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                                                                     <  3:219869/149‑1 (MQ=255)                                                           cGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg                                                                                    <  2:79535/149‑1 (MQ=255)                                                              tCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGca                                                                                  >  5:309871/1‑148 (MQ=255)                                                                    atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgcg                                                                                                            >  8:279089/1‑116 (MQ=255)                                                                    atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGt                                                                            <  6:115941/148‑1 (MQ=255)                                                                     tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc                                                                          >  5:173996/1‑149 (MQ=255)                                                                      caGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc                                                                          >  6:2148/1‑148 (MQ=255)                                                                      caGGTAATGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCACGCACACCGTcc                                                                          >  6:6456/1‑148 (MQ=255)                                                                            ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                                                                    <  1:112932/148‑1 (MQ=255)                                                                            ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                                                                    <  8:75673/148‑1 (MQ=255)                                                                              gCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAac                                                                 >  3:137541/1‑149 (MQ=255)                                                                                cccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAacac                                                               >  3:231453/1‑149 (MQ=255)                                                                                 ccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACg                                                              >  3:235913/1‑149 (MQ=255)                                                                                  cgcgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                                                                    <  3:30275/142‑1 (MQ=255)                                                                                  cgcgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                                                                    >  4:30275/1‑142 (MQ=255)                                                                                    cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAg                                                           <  4:231453/149‑1 (MQ=255)                                                                                        gTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcct                                                       <  4:235913/149‑1 (MQ=255)                                                                                         tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc                                                      <  8:228181/149‑1 (MQ=255)                                                                                             gcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGc                                                  >  7:51360/1‑149 (MQ=255)                                                                                              cAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                                                                      >  8:55619/1‑128 (MQ=255)                                                                                              cAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                                                                      <  7:55619/128‑1 (MQ=255)                                                                                                 gtcgacgtcggcggcgacgtctggcgggtgcgcctgcgtgcgcctgccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGtt                                              >  4:128134‑M2/50‑149 (MQ=255)                                                                                                  tcgacgtcggcggcgacgtctggcgggtgcgcctgcgtgcgcctgccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAg                                                   <  5:116966‑M2/95‑1 (MQ=255)                                                                                                  tcgacgtcggcggcgacgtctggcgggtgcgcctgcgtgcgcctgccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAg                                                   >  6:116966‑M2/49‑143 (MQ=255)                                                                                                   gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCg                                            >  8:149792/1‑149 (MQ=255)                                                                                                         CGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg                                                 >  5:149284‑M1/1‑138 (MQ=255)                                                                                                         CGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg                                                 <  6:149284‑M1/138‑1 (MQ=255)                                                                                                            CAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAg                                   >  5:101130‑M1/1‑149 (MQ=255)                                                                                                            CAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAg                                   >  6:173996‑M1/1‑149 (MQ=255)                                                                                                            CAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAg                                   >  4:137541‑M1/1‑149 (MQ=255)                                                                                                                 acgtctggcgggtgcgcctgcgtgcgcctgccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaa                              <  3:128134‑M2/116‑1 (MQ=255)                                                                                                                               ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac                             <  2:27172/136‑1 (MQ=255)                                                                                                                               ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac                             >  1:27172/1‑136 (MQ=255)                                                                                                                               ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGt                >  3:107944/1‑149 (MQ=255)                                                                                                                               ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGGGAACACCGCGCCATGGt                >  8:116284/1‑149 (MQ=255)                                                                                                                                             cgccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCa  >  1:92277/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                TTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCA  >  NC_002947/5945090‑5945378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.