New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6054874	37 (0.760)	3 (0.060)	3/252	NT	8.0%	coding (252/429 nt)	exbD	TonB‑gated outer membrane transporter gating inner membrane protein
	?	NC_002947	= 6054909	33 (0.700)					coding (287/429 nt)	exbD	TonB‑gated outer membrane transporter gating inner membrane protein

GTCGCCGCTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCGGTCTG  >  NC_002947/6054728‑6055021                                                                                                                                                   |                                                                                                                                                    gTCGCCGCTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGa                                                                                                                                                   <  2:194769/149‑1 (MQ=255)    gccgcTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGCCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACAAGAACCTGTATTTCGGCGACGATCAGGTTGCTGCACCCGACCa                                                                                                                                                >  8:44148/1‑149 (MQ=255)     ccgcTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCTAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAg                                                                                                                                               <  7:126939/149‑1 (MQ=255)     ccgcTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAg                                                                                                                                               >  5:264494/1‑149 (MQ=255)      cgcTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGc                                                                                                                                              >  7:178448/1‑149 (MQ=255)           ccTTGGCTACTGTCTACATCAAGGTCGACCTGCCGTCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTgg                                                                                                                                          <  2:130219/148‑1 (MQ=255)           ccTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGGCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTg                                                                                                                                           <  5:75873/147‑1 (MQ=255)           ccTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGc                                                                                                                                         <  3:113023/149‑1 (MQ=255)           ccTTGGCTACGGTCGACATCAAGCTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTgg                                                                                                                                          <  2:125626/148‑1 (MQ=255)            cTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGcc                                                                                                                                        <  7:196620/149‑1 (MQ=255)            cTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGcc                                                                                                                                        <  6:264494/149‑1 (MQ=255)                gCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGAt                                                                                                                                    >  1:134407/1‑149 (MQ=255)                      gacgccATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACAGGCGCCAAGGCCGGAGAACCCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGAGACGATCAGGTGGCTGCACCCGACCAGCTTGGCCCGATGATCGa                                                                                                                              >  8:140265/6‑149 (MQ=255)                         gACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGc                                                                                                                           <  2:192397/149‑1 (MQ=255)                                    cGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAgg                                                                                                                >  4:59713‑M2/1‑147 (MQ=255)                                      aCCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAgggt                                                                                                              >  5:112908‑M2/1‑145 (MQ=255)                                           ccGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCaa                                                                                                                  >  1:123362/1‑140 (MQ=255)                                           ccGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGAGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACaa                                                                                                         <  7:44148/149‑1 (MQ=255)                                             ggCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAgg                                                                                                       <  7:6172/149‑1 (MQ=255)                                             ggCCGCAACCTCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCttggtcttggcgtcgagcatcgggccaagctggtcgggtgcagcaa                                                                                                       <  4:32885‑M1/149‑47 (MQ=255)                                               ccTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGa                                                                                                      >  8:165067/1‑148 (MQ=255)                                                   aaCCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAg                                                                                                        <  1:216386/142‑1 (MQ=255)                                                   aaCCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAg                                                                                                        >  2:216386/1‑142 (MQ=255)                                                       gCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGc                                                                                                                           <  1:271093/119‑1 (MQ=255)                                                       gCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGc                                                                                                                           >  2:271093/1‑119 (MQ=255)                                                               ggCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTcc                                                                                     <  8:178448/149‑1 (MQ=255)                                                                gcgcCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCa                                                                                    <  2:134407/149‑1 (MQ=255)                                                                     aaGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCttggtcttggcgtcgagcatcgggccaagctggtcgggtgcag                                                                                                          >  6:141542‑M1/1‑79 (MQ=255)                                                                     aaGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCttggtcttggcgtcgagcatcgggccaagctggtcgggtgcag                                                                                                          <  5:141542‑M1/122‑44 (MQ=255)                                                                                 aCCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTg                                                                    >  4:23454/1‑148 (MQ=255)                                                                                        ttCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGACGTGGATTACgg                                                            <  5:92171/149‑1 (MQ=255)                                                                                              aGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCt                                                      <  3:23454/149‑1 (MQ=255)                                                                                                 gTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGAt                                                   <  5:690/149‑1 (MQ=255)                                                                                                 gTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGAt                                                   <  7:165067/149‑1 (MQ=255)                                                                                                  tCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAaccac                                                                                                >  6:17681/1‑103 (MQ=255)                                                                                                    aaGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAg                                                                         <  5:89556/124‑1 (MQ=255)                                                                                                    aaGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAg                                                                         >  6:89556/1‑124 (MQ=255)                                                                                                            ccAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGtgatg                                         >  3:139380/1‑148 (MQ=255)                                                                                                             cAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGaa                                       <  4:139380/149‑1 (MQ=255)                                                                                                              aGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACAATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGaa                                       >  8:287063/1‑148 (MQ=255)                                                                                                                      tATGTCGGCGACGATCATGTTGCTTCACCCGACCATCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAATCACCATCTTTTTCCAGGCTGACAAATGCGTGGATTACGGCGACCTTATGGAAGTGATGAACAACATg                                <  7:140265/147‑1 (MQ=255)                                                                                                                           cGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGcgg                         >  7:226734/1‑149 (MQ=255)                                                                                                                                         ttGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAgggtgcagcaacctgatcgtcgccgacatacagcttctggtcggccttgacgctgacgaacaccggtttctccggccttggcgccggtttggaggttgcggcc           <  4:32885‑M2/149‑104 (MQ=255)                                                                                                                                            ctgcACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAgggtgcagcaacctgatcgtcgccgacatacagcttctggtcggccttgacgctgacgaacaccggtttctccggcctt                                   <  5:141542‑M2/122‑80 (MQ=255)                                                                                                                                            ctgcACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAgggtgcagcaacctgatcgtcgccgacatacagcttctggtcggccttgacgctgacgaacaccggtttctccggcctt                                   >  6:141542‑M2/1‑43 (MQ=255)                                                                                                                                              gcACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCg       >  4:12260/1‑148 (MQ=255)                                                                                                                                              gcACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCg       <  3:12260/148‑1 (MQ=255)                                                                                                                                                aCCCttggtcttggcgtcgagcatcgggccaagctggtcgggtgcagcaacctgatcgtcgccgacatacagcttctggtcggccttgacgctgacgaacaccggtttctccggccttggcgccggtttggcggttgaggccggcaggt    >  5:112908‑M1/1‑4 (MQ=255)                                                                                                                                                  ccttggtcttggcgtcgagcatcgggccaagctggtcgggtgcagcaacctgatcgtcgccgacatacagcttctggtcggccttgacgctgacgaacaccggtttctccggccttggcgccggtttggcggttgaggccggcaggtcg  >  4:59713‑M1/1‑2 (MQ=255)                                                                                                                                                  ccGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCGGTCTg  >  8:142888/1‑149 (MQ=255)                                                                                                                                                  ccGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACAATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCGGTCTg  >  6:73288/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTCGCCGCTCCCTTGGCTACGGTCGACATCAAGGTCGACCTGCCGGCCTCAACCGCCAAACCGGCGCCAAGGCCGGAGAAACCGGTGTTCGTCAGCGTCAAGGCCGACCAGAAGCTGTATGTCGGCGACGATCAGGTTGCTGCACCCGACCAGCTTGGCCCGATGCTCGACGCCAAGACCAAGGGTGACAAGGAAACCACCATCTTTTTCCAGGCTGACAAAGGCGTGGATTACGGCGACCTGATGGAAGTGATGAACAACATGCGCGCGGCCGGCTACCTGAAAGTCGGTCTG  >  NC_002947/6054728‑6055021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.