New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 872990 | 53 (1.080) | 3 (0.060) | 3/248 | NT | 5.9% | coding (172/1272 nt) | PP_0756 | hypothetical protein |
? | NC_002947 | = 873014 | 46 (0.990) | coding (148/1272 nt) | PP_0756 | hypothetical protein |
GTAACACCGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGCACACAGACCCTGTAAACAGA > NC_002947/872866‑873144 | gTAACACCGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGAc > 2:89498/1‑149 (MQ=255) gTAACACCGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGAc < 5:173432/149‑1 (MQ=255) acacCGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACct < 1:297530‑M2/148‑3 (MQ=255) cGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAAAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGGGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctcagcg < 7:163574‑M2/149‑8 (MQ=255) cGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGcgtcg < 1:69072/149‑1 (MQ=255) aaTTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGcgtcgtc < 5:176593/149‑1 (MQ=255) aaTTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAAAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGcgtcgtc < 8:163574/149‑1 (MQ=255) gcgcAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGt < 2:223599/148‑1 (MQ=255) gcAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGcgt > 1:211745/1‑135 (MQ=255) gcAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGcgt < 2:211745/135‑1 (MQ=255) cAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctc > 2:5322‑M2/1‑126 (MQ=255) cAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctc < 1:5322‑M2/129‑4 (MQ=255) cAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGa < 3:32685/149‑1 (MQ=255) aGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGAt < 3:113575/149‑1 (MQ=255) cggcgTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGc < 5:127324/149‑1 (MQ=255) gCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGaa > 3:92411/1‑149 (MQ=255) aGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGccc > 1:88794/1‑149 (MQ=255) aGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGcc > 2:232261/1‑148 (MQ=255) gCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGctc < 5:199572/149‑1 (MQ=255) cacAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGTCATc < 2:33739/125‑1 (MQ=255) aCCAGCCGAGAGCGCCGGACGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATc > 1:33739/1‑127 (MQ=255) ccAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCtt > 2:63779/1‑149 (MQ=255) gCCGAGAGCGCCGGCCGCCCGTGGAAATCGGAAGTGTGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCttgtt < 8:166857/149‑1 (MQ=255) gCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGTGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCttgtt < 2:297530/149‑1 (MQ=255) gCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCttgtt < 7:114042/149‑1 (MQ=255) gagaGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGa < 5:96178/149‑1 (MQ=255) agagCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGa > 3:154469/1‑148 (MQ=255) gagCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGaaa < 8:186390/149‑1 (MQ=255) agCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTgg < 4:262390/145‑1 (MQ=255) agCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTgg > 3:262390/1‑145 (MQ=255) cgcCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGCCCTCAGCGACGTCGTACGGTCGGATGGCATCGAATTCGCCCATCCTGCTCTCTTGTTGGCAACgg > 4:207461/1‑149 (MQ=255) cggtccgccCGTGGAAAGCTGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCTGGCGTGCAAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGTCATCGAATTCTCCCATGATGCTCTCTTGTTGGAAACGGCt < 2:144932/145‑1 (MQ=255) gccgccCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAgg < 3:223280/149‑1 (MQ=255) ccgccCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAggg < 3:199658/149‑1 (MQ=255) ccgccCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAggg > 7:27068/1‑149 (MQ=255) cgccCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGt < 4:92411/149‑1 (MQ=255) gAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAg < 8:226502/138‑1 (MQ=255) gAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAg > 7:226502/1‑138 (MQ=255) aaGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAg < 1:232261/149‑1 (MQ=255) ggAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGAc > 1:17137/1‑149 (MQ=255) aGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGaaa < 2:17137/149‑1 (MQ=255) gAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTc > 5:189703/1‑149 (MQ=255) gAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTc > 6:69542/1‑149 (MQ=255) gAGGAATGCCGGGTCGCTGAGCAGGCGTGCAAGAACGGCAGGGACCTGAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGGTCGAGACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTc > 8:214992/1‑149 (MQ=255) aGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCg < 4:154469/149‑1 (MQ=255) ccGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGTAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGcac > 1:253960/1‑149 (MQ=255) ccGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCATCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGca > 3:208317/1‑148 (MQ=255) cGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctcagcgacccggcattcctcgatatcctcacccacttccgctttccacgggcggccggcgctctcggctggttgctcaagcccttgatcgcacgccgcctgcgcaaggaat < 2:306753‑M2/148‑113 (MQ=255) tCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctcagcgacccggcattcctcgatatcctcacccacttccgctttccacgggcggccggcgctctcggctggttgctcaagcccttgatcgcacgcc > 6:138297‑M2/1‑32 (MQ=255) tCGCTGAGCAGGCGTGCCAGAACGGCAGGGACctcagcgacccggcattcctcgatatcctcacccacttccgctttccacgggcggccggcgctctcggctggttgctcaagcccttgatcgcacgcc < 5:138297‑M2/129‑98 (MQ=255) gCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTc < 2:230195/134‑1 (MQ=255) gCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTc > 1:230195/1‑134 (MQ=255) cTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAATTAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGCACACAGAcc < 1:63779/149‑1 (MQ=255) tGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAggg < 5:287553/111‑1 (MQ=255) tGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAggg > 6:287553/1‑111 (MQ=255) tGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGCACACAGACCCt > 3:160601/1‑149 (MQ=255) gcctGCCAGAACGGCAGGGACCTGAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGc < 2:41469/128‑1 (MQ=255) gCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGca > 5:246619/1‑132 (MQ=255) gCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGca < 6:246619/132‑1 (MQ=255) gTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGCACACAGACCCTGTAAACAGa > 2:145007/1‑149 (MQ=255) | GTAACACCGGCGAATTCCTTGCGCAGGCGGCGTGCGATCAAGGGCTTGAGCAACCAGCCGAGAGCGCCGGCCGCCCGTGGAAAGCGGAAGTGGGTGAGGATATCGAGGAATGCCGGGTCGCTGAGCAGGCGTGCCAGAACGGCAGGGACCTCAGCGTCGTCGTACGGTCGGATGGCATCGAATTCGCCCATCATGCTCTCTTGTTGGAAACGGCTAGGGTAA‑TAAGGTAGGGACGGGCTCCGAAAAACGGCTCGGACGCACACAGACCCTGTAAACAGA > NC_002947/872866‑873144 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |