New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1358040	68 (1.390)	4 (0.090)	4/248	NT	5.7%	coding (1221/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1358084	67 (1.450)					coding (1265/1608 nt)	PP_1182	sensor histidine kinase

TTGAAGTTCCAGCGGGTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGG  >  NC_002947/1357948‑1358227                                                                                                                                          |                                                                                                                                                  ttGAAGTTCCAGCGGGTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACtt                                                                                                                                       >  2:25340/1‑149 (MQ=255)      gTTCCAGCGGGTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCAcc                                                                                                                                  >  7:153423/1‑149 (MQ=255)          cAGCGGGTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGc                                                                                                                              >  1:210640/1‑149 (MQ=255)              gggTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTg                                                                                                                          >  8:192500/1‑149 (MQ=255)                 tagATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGAGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCTCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTg                                                                                                                          >  8:121882/3‑146 (MQ=255)                  cGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAg                                                                                                                       >  6:110511/1‑148 (MQ=255)                       tGGATGCCTTGCTCGATCGGGTGATCGAAGAGCAGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCtt                                                                                                                 >  1:197803/1‑149 (MQ=255)                         gATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGTCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGt                                                                                                               <  7:192500/149‑1 (MQ=255)                         gATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAAc                                                                                                                    <  2:148180/144‑1 (MQ=255)                         gATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGt                                                                                                               <  3:282556/149‑1 (MQ=255)                         gATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGt                                                                                                               <  8:103510/149‑1 (MQ=255)                         gATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGt                                                                                                               <  5:110511/149‑1 (MQ=255)                             ccTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCgg                                                                                                            <  7:68299/148‑1 (MQ=255)                               ttGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCaa                                                                                                         >  3:178840/1‑149 (MQ=255)                                tGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGCAGTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCaa                                                                                                         >  1:50316/1‑149 (MQ=255)                                    cGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATgcca                                                                                                    >  5:171134/1‑149 (MQ=255)                                             gATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATgccatgcgccatg                                                                                           >  1:268277/1‑149 (MQ=255)                                             gATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATgccatgcgccatg                                                                                           >  1:186742/1‑149 (MQ=255)                                               tCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGcc                                                                                         <  4:178840/149‑1 (MQ=255)                                                cGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGcc                                                                                         >  2:165701/1‑148 (MQ=255)                                                 gAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGcc                                                                                         >  4:69410/1‑147 (MQ=255)                                                        tGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCg                                                                                >  2:64845/1‑147 (MQ=255)                                                         ggCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAg                                                                             >  6:311328/1‑149 (MQ=255)                                                              cTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGACGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTgcgc                                                                        >  6:23525/1‑149 (MQ=255)                                                                 tGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCt                                                                      <  3:69410/148‑1 (MQ=255)                                                                 tGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCt                                                                      <  5:209235/148‑1 (MQ=255)                                                                   c‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGa                                                                    <  3:187243/148‑1 (MQ=255)                                                                   c‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAg                                                                   <  2:210640/149‑1 (MQ=255)                                                                     gTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGc                                                                  >  4:253425/1‑149 (MQ=255)                                                                      tGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGc                                                                  >  2:76001/1‑148 (MQ=255)                                                                      tGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCt                                                                 <  6:171134/149‑1 (MQ=255)                                                                        ccGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATgccatg                                                                                                  <  3:227202/116‑1 (MQ=255)                                                                        ccGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATgccatg                                                                                                  >  4:227202/1‑116 (MQ=255)                                                                             gTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCGAA‑GGGCGAAGTGCGCCTGAGCTATCAGc                                                           <  1:165701/149‑1 (MQ=255)                                                                              tGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTg                                                         <  2:247365/149‑1 (MQ=255)                                                                                cGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTggg                                                       >  3:132942/1‑149 (MQ=255)                                                                                 gggTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGc                                                      <  5:86010/149‑1 (MQ=255)                                                                                 gggTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGc                                                      <  7:169597/149‑1 (MQ=255)                                                                                   gTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAgccgcgcacaacccgcacctcggcacgcaaaggtgccagctcttcgatcacccgctcgagcaaggcatccagatcgacccgctggaacttc                                                        <  3:163632‑M2/147‑92 (MQ=255)                                                                                   gTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGt                                                                            <  4:95915/125‑1 (MQ=255)                                                                                   gTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGt                                                                            >  3:95915/1‑125 (MQ=255)                                                                                    ttGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑a                                                                                      >  7:59907/1‑115 (MQ=255)                                                                                    ttGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑a                                                                                      <  8:59907/115‑1 (MQ=255)                                                                                      gtgCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGc                                                  <  2:186742/148‑1 (MQ=255)                                                                                      gtgCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCCAGGCCGAgccgcgcacaacccgcacctcggcacgcaaaggtgccagctcttcgatcacccgatcgagcaaggcatccagatcgacccgctggaacttcaaggc                                                   <  1:216057‑M2/149‑97 (MQ=255)                                                                                          gcggcgACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAgccgcgcacaacccgcacctcggcacgcaaaggtgccagctcttcgatcacccgatcgagcaaggcatccagatcgacccgctggaacttcaaggccggt                                               <  3:18032‑M2/149‑101 (MQ=255)                                                                                               gACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAgccgcgcacaacccgcacctcggcacgcaaaggtgccagctcttcgatcacccgatcgagcaaggcatccagatcgacccgctggaacttcaaggccggtgcgcc                                          >  2:216057‑M2/1‑44 (MQ=255)                                                                                                  tGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGCAGTGCGCCTGAGCTATCCGCTGGGCCCGCAACGTTGCCGTAt                                     >  6:67292/1‑149 (MQ=255)                                                                                                     cAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑ACTGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCg                                   <  1:76001/149‑1 (MQ=255)                                                                                                      aGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGAt                                 <  4:251900/149‑1 (MQ=255)                                                                                                      aGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGATATCAGATGGGCCAGCAACGTTGCCGTATCGAt                                 >  6:185319/1‑149 (MQ=255)                                                                                                      aGGGCGCGGATGCCGAAGGCGCCTGGGTAGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGAt                                 >  6:181040/1‑149 (MQ=255)                                                                                                       gggCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCa                                                    <  1:221351/129‑1 (MQ=255)                                                                                                       gggCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCa                                                    >  2:221351/1‑129 (MQ=255)                                                                                                              gATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTggagga                         <  5:311328/149‑1 (MQ=255)                                                                                                                tGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATg                       <  5:165513/149‑1 (MQ=255)                                                                                                                  ccGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGAc                     >  7:8863/1‑149 (MQ=255)                                                                                                                   cGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCTGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACg                    >  5:265768/1‑149 (MQ=255)                                                                                                                   cGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTgg                                                        >  4:192419/1‑113 (MQ=255)                                                                                                                   cGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTgg                                                        <  3:192419/113‑1 (MQ=255)                                                                                                                   cGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACg                    >  4:99086/1‑149 (MQ=255)                                                                                                                    gAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACgg                   <  6:265768/149‑1 (MQ=255)                                                                                                                        gcgcCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTgg                             >  8:62322/1‑135 (MQ=255)                                                                                                                        gcgcCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTgg                             <  7:62322/135‑1 (MQ=255)                                                                                                                        gcgcCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCg               >  8:99731/1‑149 (MQ=255)                                                                                                                          gcCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCCATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTg                                                         >  4:178460/1‑105 (MQ=255)                                                                                                                          gcCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCCATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTg                                                         <  3:178460/105‑1 (MQ=255)                                                                                                                                gTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCTACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATccc       <  7:121882/149‑1 (MQ=255)                                                                                                                                 tCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATcccc      >  2:135794/1‑149 (MQ=255)                                                                                                                                   gAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGa    <  7:99731/149‑1 (MQ=255)                                                                                                                                     ggCCGAGCCGCGCTACTTTCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTTAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAgg  <  5:181040/149‑1 (MQ=255)                                                                                                                                     ggCCGAGCCGCGCTACTTTCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTTAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAgg  <  5:185319/149‑1 (MQ=255)                                                                                                                                       ccGAgccgcgcacaacccgcacctcggcacgcaaaggtgccagctcttcgatcacccgatcgagcaaggcatccagatcgacccgctggaacttcaaggccggtgcgccctgctccaggcgggcgtaggtcagcatctcgtcgaccagc  >  4:18032‑M2/1‑4 (MQ=255)                                                                                                                                          |                                                                                                                                                  TTGAAGTTCCAGCGGGTCGATCTGGATGCCTTGCTCGATCGGGTGATCGAAGAGCTGGCACCTTTGC‑GTGCCGAGGTGCGGGTTGTGCGCGGCGACTGCCAGGGCGCGGATGCCGAAGGCGCCTGGGTCGAGGCCGAGCCGCGCTACTTGCACCGGGCCCTGCAGAACCTTGTCGGCAATGCCATGCGCCATGCCG‑A‑GGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGG  >  NC_002947/1357948‑1358227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.