New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1386117 =	53 (1.080)	3 (0.060)	3/250	NT	6.0%	coding (340/1266 nt)	oprD	basic amino acid specific porin OprD
	?	NC_002947	1386160 =	44 (0.940)					coding (297/1266 nt)	oprD	basic amino acid specific porin OprD

CGAAGACCGGCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTGGCC  >  NC_002947/1386015‑1386288                                                                                                                                                   |                                                                                                                                 ctgggcttcttcggcaccatccagtccggcttcacccaatgcaccgtgggggtgggtgtcgacgccatcggcatgcgcggcctgaaactggacagcggcaagGGCCGT‑CGGATCCGGTCGTGAACAGGCCGGTACCGGCACGGCCCTTg                                                                                                                               >  8:214711‑M1/103‑149 (MQ=255)  gAAGACCGGCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGc                                                                                                                              <  6:204621/149‑1 (MQ=255)    aGACCGGCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCg                                                                                                                            <  4:293278/149‑1 (MQ=255)      aCCGGCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCt                                                                                                                          <  4:189367/149‑1 (MQ=255)          gCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTc                                                                                                                       <  1:203430/148‑1 (MQ=255)          gCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTc                                                                                                                       >  2:203430/1‑148 (MQ=255)                 ggTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGttt                                                                                                                 >  2:99435/1‑147 (MQ=255)                  cttcgagtccggcttcacccaaggcaccgtgggtgtgggtgtcgacgccatcggcatgctcggcctgaaactggacagcggcaagGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGccc                                                                                                                                  <  8:160582‑M1/44‑1 (MQ=255)                  cttcgagtccggcttcacccaaggcaccgtgggtgtgggtgtcgacgccatcggcatgctcggcctgaaactggacagcggcaagGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGccc                                                                                                                                  >  7:160582‑M1/86‑129 (MQ=255)                   tGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAgg                                                                                                             <  1:116206/149‑1 (MQ=255)                     aaCTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGA‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCCGTCCAGTTTCAGGcc                                                                                                           >  6:115899/1‑149 (MQ=255)                       cTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGa                                                                                                         <  7:203026/149‑1 (MQ=255)                         ggTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAg                                                                                                        >  2:152441/1‑148 (MQ=255)                          gTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCa                                                                                                      >  3:218918/1‑149 (MQ=255)                             aCCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGACGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGGCCAGAGACAGGCCGAGCATGc                                                                                                   >  4:12798/1‑149 (MQ=255)                               ccACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTcc                                                                                                                      <  2:110878/128‑1 (MQ=255)                               ccACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTcc                                                                                                                      >  1:110878/1‑128 (MQ=255)                                       aGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTc                                                                                         <  7:223524/149‑1 (MQ=255)                                       aGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGGCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGTCGAGCATGCCGATGGCGt                                                                                          <  1:272088/148‑1 (MQ=255)                                            ggTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGacac                                                                                    <  6:144925/149‑1 (MQ=255)                                             gtgtAGGAGATGCTGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGGGGT‑GGGAACCGGTCGGGAACAGGCGGGTACCGGCACGGCCCTTGCCGCTGTCCTGTTTCTGGCCGAGCATGCCGATGGCGTCGacacc                                                                                   <  8:89734/149‑1 (MQ=255)                                                          ggAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGc                                                                                                   <  2:169777/120‑1 (MQ=255)                                                          ggAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGc                                                                                                   >  1:169777/1‑120 (MQ=255)                                                          ggAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTg                                                                      >  6:77941/1‑149 (MQ=255)                                                            aaTTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGcc                                                                    <  1:152441/149‑1 (MQ=255)                                                                tGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTgg                                                                >  3:69925/1‑149 (MQ=255)                                                                 gACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTgg                                                                <  4:218918/148‑1 (MQ=255)                                                                                cTTGGAGTAGTCATCCTGCGAACGGCCGTGCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTc                                                  >  1:23133/1‑148 (MQ=255)                                                                                     agtagtCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTg                                           <  7:13919/149‑1 (MQ=255)                                                                                         gtCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGt                                                              <  4:297213/126‑1 (MQ=255)                                                                                         gtCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGt                                                              >  3:297213/1‑126 (MQ=255)                                                                                         gtCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTCGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCcga                                       <  7:235190/149‑1 (MQ=255)                                                                                          tCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCcgac                                      >  6:136324/1‑149 (MQ=255)                                                                                               cTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAg                                  <  5:77941/148‑1 (MQ=255)                                                                                               cTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGc                                 <  3:196020/149‑1 (MQ=255)                                                                                                  cGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAg                                                          <  1:122309/121‑1 (MQ=255)                                                                                                   gAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAg                             >  2:155350/1‑149 (MQ=255)                                                                                                    caagggccgtgccggtaccggcctgttcacgaccggatccgacggccCTTGCCGCTGTCCAGTTTCAGGCCGCGCATGCCGATGGCGTCGACACCCACCCCCACGGTGCATTGGGTGAAGCCGGACTGGATGGTGCCGAAGAAGCCCAg                             >  8:214711‑M2/48‑149 (MQ=255)                                                                                                       gggccgtgccggtaccggcctgttcccgaccggttccgacggccCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAg                                              <  8:160582‑M2/85‑1 (MQ=255)                                                                                                       gggccgtgccggtaccggcctgttcccgaccggttccgacggccCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAg                                              >  7:160582‑M2/45‑129 (MQ=255)                                                                                                         CCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAg                                              <  3:182352‑M1/126‑1 (MQ=255)                                                                                                         CCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAg                                              >  4:182352‑M1/1‑126 (MQ=255)                                                                                                          CGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGCAGAAGCCCAGGCCGGtt                      <  8:269398‑M1/149‑1 (MQ=255)                                                                                                               ggAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTttctt                  >  5:215898/1‑149 (MQ=255)                                                                                                                gAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCATGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTttcttc                 >  2:302055/1‑149 (MQ=255)                                                                                                                  aCCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTcgc               <  1:155350/149‑1 (MQ=255)                                                                                                                       tCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCTGTTTCTTCGCGACgg          <  5:144321/149‑1 (MQ=255)                                                                                                                            aaCAGGCGGGGACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCTCGTGGCCTTGGTTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTg     <  3:12798/149‑1 (MQ=255)                                                                                                                            aaCAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTg     <  2:23133/149‑1 (MQ=255)                                                                                                                            aaCAGGCCGGTACCGGCACGGCCCTTGCCGCCGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTg     <  5:115899/149‑1 (MQ=255)                                                                                                                               aGGCCTGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTGgcc  >  3:154231/1‑149 (MQ=255)                                                                                                                               aGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTGgcc  >  1:233576/1‑149 (MQ=255)                                                                                                                                 gCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCg                         >  7:202464/1‑124 (MQ=255)                                                                                                                                 gCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCg                         <  8:202464/124‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                 CGAAGACCGGCAGCGCGGTGAACTGGTCACCCACTTTCAGCACGGTGTCGGAGATGCGGAATTTGACCGCGCCGCCGCCCTTGGAGTAGTCATCCTGCGAACGGCCGT‑CGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGGGTGAAGCCGGACTCGAAGGTGCCGACGAAGCCCAGGCCGGTTTCTTCGCGACGGCTCTGGCC  >  NC_002947/1386015‑1386288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.