| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1419133 = | 28 (0.570) | 3 (0.070) | 3/246 | NT | 12.2% | intergenic (‑251/+106) | PP_1241/PP_1242 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 1419186 = | 17 (0.370) | intergenic (‑304/+53) | PP_1241/PP_1242 | hypothetical protein/hypothetical protein | |||||
GACGTGATGAGGCTAGGGCGCGAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGTCGCC > NC_002947/1419041‑1419331 | gACGTGATGAGGCTAGGGCGCGAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACatgatg < 8:63967/149‑1 (MQ=255)ctgctggatgatgccgagttggggatgatgaaaaagtaagtgcgaggaagccctggaaacgcaaaatatcccggggcttcaccgattgcatcATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACatgatg > 1:161392‑M1/93‑149 (MQ=255) cgcgAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGATATGATGCAATCGGTGAAGCCCCgg < 7:45406/149‑1 (MQ=255) gcgAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTg > 1:275226/1‑139 (MQ=255) gcgAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTg < 2:275226/139‑1 (MQ=255) gagcggagcgCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCgg < 8:8297/146‑1 (MQ=255) gagcggagcgCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCgg > 7:8297/1‑146 (MQ=255) gcTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGt < 3:153827/149‑1 (MQ=255) gcTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGt < 4:118730/149‑1 (MQ=255) gCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTc > 2:303647/1‑148 (MQ=255) gaggaagccctggaaacgcaaaatatcccggggcttcaccgattgcatcATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGTGACatgat < 6:305351‑M1/56‑1 (MQ=255) gaggaagccctggaaacgcaaaatatcccggggcttcaccgattgcatcATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGTGACatgat > 5:305351‑M1/50‑105 (MQ=255) ggTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCac < 3:47169/149‑1 (MQ=255) gTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCact > 1:187810/1‑149 (MQ=255) gTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGACCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTtcat > 3:257115/1‑149 (MQ=255) gAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATccc < 2:187810/149‑1 (MQ=255) gAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATccc < 1:303647/149‑1 (MQ=255) aaaTGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATccc > 6:263052/1‑148 (MQ=255) catcatgtcgcaagcgcaccttagcgagcccccacgctgacagctggagtgcgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCcagcag > 1:161392‑M2/58‑149 (MQ=255) atcatgtcacaagcgcaccttagcgagcccccacgctgacagctggagtgcgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTc > 5:305351‑M2/57‑105 (MQ=255) atcatgtcacaagcgcaccttagcgagcccccacgctgacagctggagtgcgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTc < 6:305351‑M2/49‑1 (MQ=255) TGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCt < 3:301481‑M1/149‑1 (MQ=255) TGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCt > 8:25120‑M1/1‑149 (MQ=255) ccAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATcg > 8:28157/1‑149 (MQ=255) cAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATACCCAAATCGGCATCATACAGCAGCGCCTTGGCCATcgc > 5:273681/1‑149 (MQ=255) aGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGt < 5:85282/149‑1 (MQ=255) gcgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGt > 5:93372‑M2/8‑149 (MQ=255) gcgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGt > 3:227762‑M2/8‑149 (MQ=255) cgacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGTc > 6:159012‑M2/7‑149 (MQ=255) gacatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGTCg > 3:261753‑M2/6‑149 (MQ=255) acatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATg < 4:217222‑M2/119‑1 (MQ=255) acatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATg > 3:217222‑M2/5‑123 (MQ=255) acatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTg > 4:61525‑M2/5‑144 (MQ=255) acatGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTg < 3:61525‑M2/140‑1 (MQ=255) catGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGTCGcc > 7:86267‑M2/4‑149 (MQ=255) | GACGTGATGAGGCTAGGGCGCGAGCGGAGCGCTGGCAACGGATAGCGCGGGTTTGCTGAGCGTTTGGGAAATGGACTACATGGCGGTAGAGAATGTCGCACTCCAGCTGTCAGCGTGGGGGCTCGCTAAGGTGCGCTTGCGACATGATGCAATCGGTGAAGCCCCGGGATATTTTGCGTTTCCAGGGCTTCCTCGCACTTACTTTTTCATCATCCCCAACTCGGCATCATCCAGCAGCGCCTTGGCCATCGCGCTCAGGTAATGCGAGGCCCAGATCAGTTTCTGGTCGCC > NC_002947/1419041‑1419331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |