New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2654023 =	48 (0.980)	4 (0.090)	4/246	NT	8.5%	coding (338/498 nt)	PP_2326	universal stress protein
	?	NC_002947	2654096 =	41 (0.890)					coding (411/498 nt)	PP_2326	universal stress protein

TGACCTGGCGGTGATCAAGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACAAAATAGTTCTAGATTTATTTC  >  NC_002947/2653955‑2654239                                                                                                                                              |                                                                                                                                                tGACCTGGCGGTGATCAAGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCAcgg                                                                                                                                          >  5:251515/1‑149 (MQ=255)   aCCTGGCGGTGATCAAGGCCGTGCGTGTGCGGCAGGGGGACCCGGCGCAGGTGAGTCTCGACCAGGCCCAGCTGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCAcggcg                                                                                                                                        <  4:15116/149‑1 (MQ=255)        gCGGTGATCAAGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGc                                                                                                                                    <  2:195031/148‑1 (MQ=255)             agggcaccatgtacaccggcaccggcgacagctgcagcagccgcaccgccgtgcgcCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTgggg                                                                                                                                                 <  2:232509‑M1/74‑1 (MQ=255)             agggcaccatgtacaccggcaccggcgacagctgcagcagccgcaccgccctgcgcCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTgggg                                                                                                                                                 >  1:232509‑M1/57‑130 (MQ=255)               gcatggCCGGGCGTGTGCGGCAGGGCGACCCGGCGCAGGGGATTCTCGACCAGGCCCAGCGGCTTAGCGTCGACCTGTTGATATTTGGTAGCCAGAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGctgctg                                                                                                                            <  8:50419/145‑1 (MQ=255)                 aaGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGAATCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGctgctg                                                                                                                            >  3:34759/1‑147 (MQ=255)                  aGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAg                                                                                                                         <  8:160105/149‑1 (MQ=255)                  aGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAg                                                                                                                         <  8:164554/149‑1 (MQ=255)                    gCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCt                                                                                                                       <  5:162085/149‑1 (MQ=255)                            tgtgCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccgg                                                                                                               >  1:62966/1‑149 (MQ=255)                                cGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgcc                                                                                                           <  5:31330/149‑1 (MQ=255)                                 ggCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgccg                                                                                                          <  2:246230/149‑1 (MQ=255)                                  gCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgccgg                                                                                                         <  3:278308/149‑1 (MQ=255)                                   ctgggCGACCCGGCGCAGGTGATTCTCGACGAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgccggt                                                                                                        <  4:34759/147‑1 (MQ=255)                                   cAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgccggt                                                                                                        <  4:5642/149‑1 (MQ=255)                                   cAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCgccggtgccggt                                                                                                        <  2:6660/149‑1 (MQ=255)                                       gCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTa                                                                                                     >  7:226209/1‑148 (MQ=255)                                                 gaaGGTGATTCTCGACCAGGCCCAGCGGATAAGCGTCGAACTGTTGATAATTGGTAGCCACAGTGCCCGTGCCCGCGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGAAGCTGTCGCCGGTGCCGGTGTACATGCTAccca                                                                                          >  4:275969/3‑148 (MQ=255)                                                          tctcGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTg                                                                                                                      <  7:245232/112‑1 (MQ=255)                                                          tctcGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTg                                                                                                                      >  8:245232/1‑112 (MQ=255)                                                          tctcGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCgcag                                                                                  >  4:26654/1‑148 (MQ=255)                                                               aCCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTg                                                                            >  2:91158/1‑149 (MQ=255)                                                               aCCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTg                                                                            >  7:107256/1‑149 (MQ=255)                                                                ccAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTgg                                                                           <  7:29568/149‑1 (MQ=255)                                                                 cAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTggg                                                                          <  2:62966/149‑1 (MQ=255)                                                                   ggCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGc                                                                        >  3:17320/1‑149 (MQ=255)                                                                    gCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCg                                                                       >  2:42960/1‑149 (MQ=255)                                                                    ccccagcggtacatccaccccggcaccggcactgtggctaccaaatatcaacaggtcgacgcttagccgctgggGCGCAGGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCt                                                                                          >  1:232509‑M2/75‑130 (MQ=255)                                                                    ccccagcggtacatccaccccggcaccggcactgtggctaccaaatatcaacaggtcgacgcttagccgctgggGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCt                                                                                          <  2:232509‑M2/56‑1 (MQ=255)                                                                     cccagcggtacatccaccccggcaccggcactgtggctaccaaatatcaacaggtcgacgcttagccgctgggGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATgg                                                                                                <  6:256508‑M2/50‑1 (MQ=255)                                                                     cccagcggtacatccaccccggcaccggcactgtggctaccaaatatcaacaggtcgacgcttagccgctgggGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATgg                                                                                                >  5:256508‑M2/74‑123 (MQ=255)                                                                      CCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTa                                                                     >  8:226209‑M1/1‑149 (MQ=255)                                                                       CAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAg                                                                    <  1:39811‑M1/149‑1 (MQ=255)                                                                           GGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGaa                                                                 <  6:42879‑M1/148‑1 (MQ=255)                                                                            GCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAg                                                                    >  6:47275‑M1/1‑144 (MQ=255)                                                                            GCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAg                                                                    <  5:47275‑M1/144‑1 (MQ=255)                                                                                 gCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGa                                                          <  1:42960/149‑1 (MQ=255)                                                                                 gCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGa                                                          <  6:251515/149‑1 (MQ=255)                                                                                  cGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGaa                                                         <  2:39811/149‑1 (MQ=255)                                                                                  cGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGaa                                                         <  3:275969/149‑1 (MQ=255)                                                                                           gTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGgcgc                                                                                    <  4:4115/113‑1 (MQ=255)                                                                                           gTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGgcgc                                                                                    >  3:4115/1‑113 (MQ=255)                                                                                           gTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAg                                                    <  4:80048/145‑1 (MQ=255)                                                                                           gTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAg                                                    >  3:80048/1‑145 (MQ=255)                                                                                              gATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGGACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTTCATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGGAGt                                             >  1:247281/1‑149 (MQ=255)                                                                                                         gCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCcgc                                   <  4:17320/148‑1 (MQ=255)                                                                                                           cacaGTGCCGGTGCCGGGGTGGATGTACAGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCAGGTGTACATGGTGCCCTTGGCGCAGCATATGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCggg                                >  1:247362/1‑149 (MQ=255)                                                                                                           aacaGTGCCGGTGCCGTGTTGGATTTACCGCTGGGGCGCACGGAGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAATATAGGTGCAGTCCATTTCCGCggg                                <  2:247362/148‑1 (MQ=255)                                                                                                            acaGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCggg                                >  1:280849/1‑148 (MQ=255)                                                                                                                     gtgccggGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACaa                      <  5:42879/149‑1 (MQ=255)                                                                                                                           gggTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACAAAATAGt                >  4:20557/1‑149 (MQ=255)                                                                                                                                    tACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACAAAATAGTTCTAGattt       <  3:26654/149‑1 (MQ=255)                                                                                                                                       cgctgggGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACAAAATAGTTCTAGatttatt    >  8:5957‑M2/8‑149 (MQ=255)                                                                                                                                         ctgggGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCACTCCATTTCCGCGGGCATGTAACAAAATAGTTCTAGATTTATTTc  <  1:91158‑M2/144‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                TGACCTGGCGGTGATCAAGGCCGTGCGTGTGCGGCAGGGCGACCCGGCGCAGGTGATTCTCGACCAGGCCCAGCGGCTAAGCGTCGACCTGTTGATATTTGGTAGCCACAGTGCCGGTGCCGGGGTGGATGTACCGCTGGGGCGCACGGCGGTGCGGCTGCTGCAGCTGTCGCCGGTGCCGGTGTACATGGTGCCCTTGGCGCAGCATCTGGGGCGTAGGAAAACGTGAAGATAGGTGCAGTCCATTTCCGCGGGCATGTAACAAAATAGTTCTAGATTTATTTC  >  NC_002947/2653955‑2654239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.