New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3174337	51 (1.040)	3 (0.060)	3/250	NT	5.7%	coding (508/837 nt)	PP_2786	hypothetical protein
	?	NC_002947	= 3174361	50 (1.070)					coding (532/837 nt)	PP_2786	hypothetical protein

TGGGTAGCGACTACTCCTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGACAGCATTACCT  >  NC_002947/3174218‑3174505                                                                                                                                                |                                                                                                                                                 tGGGTAGCGACTACTCCTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGAccggc                                                                                                                                             <  6:29642‑M2/149‑6 (MQ=255)          actactCCTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAg                                                                                                                                    <  6:272580/149‑1 (MQ=255)          actactCCTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAg                                                                                                                                    <  2:231482/149‑1 (MQ=255)              ctgcTATGCAGACCTCGACAAGATTCGCGCCGAAGTCTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTc                                                                                                                                 <  8:124306/145‑1 (MQ=255)                 cTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAgg                                                                                                                             >  1:45181/1‑149 (MQ=255)                      ccGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGAAAAAAGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTgg                                                                                                                        >  1:256364/1‑149 (MQ=255)                       cGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAACCGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTggg                                                                                                                       <  2:224355/149‑1 (MQ=255)                        gACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGt                                                                                                                      >  4:18668/1‑149 (MQ=255)                           cTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGa                                                                                                                   <  3:247835/149‑1 (MQ=255)                                 aaGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACaag                                                                                                               >  3:139707/1‑147 (MQ=255)                                  aGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACaagaag                                                                                                            <  8:208473/149‑1 (MQ=255)                                          gcCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACt                                                                                                    >  2:6191/1‑149 (MQ=255)                                          gcCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGAGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACt                                                                                                    >  5:79632/1‑149 (MQ=255)                                           ccGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTg                                                                                                   <  4:139707/149‑1 (MQ=255)                                            cGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTgg                                                                                                  >  6:228154/1‑149 (MQ=255)                                            cGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTgg                                                                                                  <  5:228154/149‑1 (MQ=255)                                                     tCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACt                                                                                                        <  6:98417/134‑1 (MQ=255)                                                     tCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACt                                                                                                        >  5:98417/1‑134 (MQ=255)                                                          aaaCGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGAc                                                                                    <  5:29642/149‑1 (MQ=255)                                                              gCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAAc                                                                                                         >  3:166399/1‑124 (MQ=255)                                                              gCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAAc                                                                                                         <  6:143468/124‑1 (MQ=255)                                                              gCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAAc                                                                                                         >  5:143468/1‑124 (MQ=255)                                                              gCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAAc                                                                                                         <  4:166399/124‑1 (MQ=255)                                                               cTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGActtctt                                                                               <  6:79632/149‑1 (MQ=255)                                                                  gTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGa                                                                            <  1:6191/149‑1 (MQ=255)                                                                   ttGGCGAAGAGCAGTTGCAGGGCCGCGAATGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGAt                                                                           <  8:127084/149‑1 (MQ=255)                                                                        gAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTaa                                                                       >  4:73744/1‑148 (MQ=255)                                                                         aaGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTaa                                                                       >  4:86852/1‑147 (MQ=255)                                                                          agagCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGAt                                                                           >  4:285672/1‑142 (MQ=255)                                                                          agagCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGAt                                                                           <  3:285672/142‑1 (MQ=255)                                                                              cAGTTGCAGGGCCGCGTTTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGTGTTGTCATGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGTTGTAAATGgtgt                                                                <  2:276854/149‑1 (MQ=255)                                                                               aGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGgtgt                                                                >  2:193855/1‑148 (MQ=255)                                                                                      gggCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACACCAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCa                                                        <  7:199898/149‑1 (MQ=255)                                                                                       ggCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCaa                                                       <  2:256364/149‑1 (MQ=255)                                                                                        gCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTggg                                                                                                                       <  3:150519/84‑1 (MQ=255)                                                                                        gCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTggg                                                                                                                       >  4:150519/1‑84 (MQ=255)                                                                                         ccGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAg                                                      >  6:233281/1‑148 (MQ=255)                                                                                              aTTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATg                                                <  3:86852/149‑1 (MQ=255)                                                                                               ttGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGgt                                                                  <  2:42329/130‑1 (MQ=255)                                                                                               ttGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGgt                                                                  >  1:42329/1‑130 (MQ=255)                                                                                                  cTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATgcgc                                             <  5:233281/148‑1 (MQ=255)                                                                                                     cGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCAccc                                         >  6:155154/1‑149 (MQ=255)                                                                                                          tCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTg                                       >  1:237229/1‑146 (MQ=255)                                                                                                          tCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAg                                    <  1:193855/149‑1 (MQ=255)                                                                                                             aGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGAccggctcacgctcgatcacgtagcaatcgcggccctgcaactgctcttc                                                                                                 <  6:214883‑M2/85‑50 (MQ=255)                                                                                                             aGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGAccggctcacgctcgatcacgtagcaatcgcggccctgcaactgctcttc                                                                                                 >  5:214883‑M2/1‑36 (MQ=255)                                                                                                                gTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGAccggctcacgcgcgatcacgtagcaatcgcggccctgcaactgcgcttcgcccaccagcgggtggcgatagtcttcggcgcgaatcgtgtcgaggtcggcagaggagtaggcgcta                              <  7:209981‑M2/149‑117 (MQ=255)                                                                                                                       ggCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCg                       <  2:45181/149‑1 (MQ=255)                                                                                                                         cGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGAc                     <  3:18668/149‑1 (MQ=255)                                                                                                                                 gCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGGCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGa             >  2:81249/1‑149 (MQ=255)                                                                                                                                   cGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGACa           <  5:155154/149‑1 (MQ=255)                                                                                                                                          gCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGACAGCATTAc    >  7:222262/1‑149 (MQ=255)                                                                                                                                          gCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCG‑CAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGAc            <  4:216/140‑1 (MQ=255)                                                                                                                                          gCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCG‑CAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGAc            >  3:216/1‑140 (MQ=255)                                                                                                                                            cAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGAc                                  <  6:192042/117‑1 (MQ=255)                                                                                                                                            cAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAACGTGTGATGTTCAAGCAGATGCGCACCCTGAAGAc                                  >  5:192042/1‑117 (MQ=255)                                                                                                                                            cAAGACCGGCTACAACAAGCGCAAGGTCTGGGTTGACAAGAAGCACTCACTGGTGCTGCGCCAGGACTTCTTCGATGGAGAAGGTGTGATGTTCAAGCAGCTGCGCACCCTGAAGGCTGAACGCATCGAGCAGGGCGCCAGCAGTACCt  >  8:22454/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 TGGGTAGCGACTACTCCTATGCCGACCTCGACAAGATTCGCGCCGAAGACTATCGCCAAACGCTGGTTGGCGAAGAGCAGTTGCAGGGCCGCGATTGCTACGTGATCGAGCGTGAGCCGGCGACGCCTGCCGTGCTGGCCAAGACCGGCTACAACAAGCTCAAGGTCTGGGTTGACAAGAAGAACTCACTGGTGCTGCGCCAGGACTTCTTCGATGTAAAAGGTGTGATGTTCAAGCAGATGCGCACCCTGAAGACTGAAACCATCGACCAGATCGACAGCATTACCT  >  NC_002947/3174218‑3174505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.