New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4095364	51 (1.040)	3 (0.060)	3/248	NT	6.0%	coding (120/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	= 4095423	45 (0.970)					coding (61/765 nt)	PP_3603	GntR family transcriptional regulator

CAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCT  >  NC_002947/4095277‑4095570                                                                                                                                                     |                                                                                                                                                    cAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgc                                                                                                                                                   <  5:55779‑M2/149‑3 (MQ=255) cAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgc                                                                                                                                                   <  7:214554‑M2/149‑3 (MQ=255)           aTCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTgcg                                                                                                                                         >  5:117506/1‑149 (MQ=255)              gCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGcc                                                                                                                                       <  6:117506/148‑1 (MQ=255)               ccTCACGCCCCCCCGTGCGTCTGCCGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCgg                                                                                                                                     <  8:64464/149‑1 (MQ=255)               ccTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCgg                                                                                                                                     <  1:149277/149‑1 (MQ=255)               ccTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCgg                                                                                                                                     >  2:1712/1‑149 (MQ=255)                     gCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCtt                                                                                                                               <  8:41886/149‑1 (MQ=255)                                  aCTTACTCCCTCTTCGGCCATGATCTGCGATTCGGTGTGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GAGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCTGACTGCGCGGCTTGCGCGGGGTCCTTGCCTGTACctgct                                                                                                                  <  8:214554/149‑1 (MQ=255)                                  aCTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctgct                                                                                                                  <  6:55779/149‑1 (MQ=255)                                   cTGACGCCCTCTTCAGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctgctg                                                                                                                 >  8:214057/1‑149 (MQ=255)                                      aCGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGctc                                                                                                              >  6:261841/1‑149 (MQ=255)                                        gCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTAGGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGctc                                                                                                              >  1:246306/1‑149 (MQ=255)                                          ccTCTTCAGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTc                                                                                                          <  7:214057/149‑1 (MQ=255)                                            tctTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAt                                                                                                        >  2:272687/1‑149 (MQ=255)                                                cGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAtt                                                                                                       <  1:272687/146‑1 (MQ=255)                                                 ggCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGccc                                                                                                   >  1:16302/1‑149 (MQ=255)                                                 ggCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGccc                                                                                                   <  2:137825/149‑1 (MQ=255)                                                 ggCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGcc                                                                                                    <  4:188112/148‑1 (MQ=255)                                                  gCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCt                                                                                                  <  1:1712/149‑1 (MQ=255)                                                  gCCATGATCTGCGATTCGGTCGGCAGCTTGTAGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCt                                                                                                  >  2:249171/1‑149 (MQ=255)                                                    cATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTg                                                                                                 >  1:14775/1‑148 (MQ=255)                                                         tCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgc                                                                                                                                                 <  8:137880‑M2/95‑5 (MQ=255)                                                         tCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgc                                                                                                                                                 >  7:137880‑M2/1‑91 (MQ=255)                                                         tCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCATGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTc                                                                                           >  5:282843/1‑149 (MQ=255)                                                                  cggtcggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTGCTGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGAGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTg                                                                                                            <  5:285295/123‑1 (MQ=255)                                                                       ggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAg                                                                             >  4:147920/1‑149 (MQ=255)                                                                                  gccgcGCTTTAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTc                                                                                           <  7:174416/124‑1 (MQ=255)                                                                                  gccgcGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTc                                                                                           >  8:174416/1‑124 (MQ=255)                                                                                  gccgcGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATa                                                                  <  2:14775/149‑1 (MQ=255)                                                                                   ccgcGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtca                                                                                                >  6:253293‑M2/1‑65 (MQ=255)                                                                                   ccgcGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtca                                                                                                <  5:253293‑M2/118‑54 (MQ=255)                                                                                   ccgcGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAg                                                                 >  3:276172/1‑149 (MQ=255)                                                                                    cgcgCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcgg                                                                <  1:305675‑M2/149‑86 (MQ=255)                                                                                           gAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAg                                                           <  4:276172/147‑1 (MQ=255)                                                                                                 gCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTa                                                   <  2:246306/149‑1 (MQ=255)                                                                                                   cGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTAc                                                  >  5:86472/1‑148 (MQ=255)                                                                                                          cGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATc                                              <  3:147920/147‑1 (MQ=255)                                                                                                          cGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGGACCTGCTGCTCTGTCATTGCCCTGTAGTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATca                                             >  8:257529/1‑148 (MQ=255)                                                                                                                       tCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGc                               <  1:14804/149‑1 (MQ=255)                                                                                                                         aGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTg                                                     <  3:21823/125‑1 (MQ=255)                                                                                                                         aGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTg                                                     >  4:21823/1‑125 (MQ=255)                                                                                                                            aCCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGtat                          <  7:144137/149‑1 (MQ=255)                                                                                                                                  aCCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTg                    <  7:12143/149‑1 (MQ=255)                                                                                                                                  aCCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTg                    <  2:178613/149‑1 (MQ=255)                                                                                                                                    cAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGcc                  >  7:281450/1‑149 (MQ=255)                                                                                                                                             ggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGTCAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCttt           <  1:249171/147‑1 (MQ=255)                                                                                                                                             ggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTg          <  8:281450/148‑1 (MQ=255)                                                                                                                                             ggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTg          <  2:16302/148‑1 (MQ=255)                                                                                                                                             ggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCCGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTg          <  5:261841/148‑1 (MQ=255)                                                                                                                                               ccAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTg          >  8:145769/1‑146 (MQ=255)                                                                                                                                               ccAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTg          <  7:145769/146‑1 (MQ=255)                                                                                                                                               ccAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAg       >  1:196334/1‑149 (MQ=255)                                                                                                                                                    cTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCt  <  2:196334/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCT‑‑GCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCT  >  NC_002947/4095277‑4095570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.