New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4845323 =	50 (1.020)	3 (0.070)	3/246	NT	6.2%	coding (73/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	4845374 =	44 (0.960)					coding (124/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

GCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGG  >  NC_002947/4845231‑4845518                                                                                                                                                |                                                                                                                                                 gCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACAGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCCGCAGTTCTGCTGCCCCGGCTGACAGGCGGTGGCCGAGTCGAtc                                                                                                                                             >  1:2246/1‑149 (MQ=255)  ccTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGAtcg                                                                                                                                            >  8:40086/1‑149 (MQ=255)   cTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGAtcgt                                                                                                                                           <  8:125351/149‑1 (MQ=255)    tGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGAtcgtc                                                                                                                                          >  2:297856/1‑149 (MQ=255)      aGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGAtcgtcg                                                                                                                                         <  4:300929/148‑1 (MQ=255)           tgtCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAg                                                                                                                                   <  1:221878/149‑1 (MQ=255)           tgtCTGCCCTAGGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAg                                                                                                                                   <  6:142417/149‑1 (MQ=255)            gtCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCATCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAgg                                                                                                                                  >  2:254833/1‑149 (MQ=255)               tGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCt                                                                                                                               >  1:203875/1‑149 (MQ=255)               tGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGCCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCt                                                                                                                               >  5:139580/1‑149 (MQ=255)                 cccTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCt                                                                                                                               <  2:203875/147‑1 (MQ=255)                 cccTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTg                                                                                                                              >  2:140167/1‑148 (MQ=255)                         cccAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTgg                                                                                                                             <  4:216863/141‑1 (MQ=255)                         cccAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtac                                                                                                                     >  1:194887/1‑149 (MQ=255)                         cccAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtac                                                                                                                     <  1:140167/149‑1 (MQ=255)                         cccAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtac                                                                                                                     >  3:220/1‑149 (MQ=255)                         cccAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGACCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTgg                                                                                                                             >  3:216863/1‑141 (MQ=255)                           cAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtacta                                                                                                                   >  3:234306/1‑149 (MQ=255)                           cAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtacta                                                                                                                   >  7:3061/1‑149 (MQ=255)                            aaCCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtactac                                                                                                                  <  2:194887/149‑1 (MQ=255)                                gACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAac                                                                                                              <  8:3061/149‑1 (MQ=255)                                         cTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCATCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAg                                                                                                       <  1:254833/147‑1 (MQ=255)                                             cACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGacaa                                                                                                 <  4:220/149‑1 (MQ=255)                                                             tCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGaa                                                                                 <  1:297856/149‑1 (MQ=255)                                                               cccACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATta                                                                                                                      >  2:91146/1‑110 (MQ=255)                                                               cccACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATta                                                                                                                      <  1:91146/110‑1 (MQ=255)                                                               cccACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCACATATGCTGCCCCGGCTGTCAGGCGGTGGCCGACTCGAACGTCGCTGGAGGCCTGGAACAATACTACCAACACCGCAGCTACAACACCGCCAACCCCGaacc                                                                               >  6:99184/1‑147 (MQ=255)                                                                taatgttccaggcctccagcgacgatcgaCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGa                                                                                                                                               >  1:167091‑M1/30‑84 (MQ=255)                                                                taatgttccaggcctccagcgacgatcgaCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGa                                                                                                                                               <  2:167091‑M1/55‑1 (MQ=255)                                                                ccACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGcc                                                                              >  1:142337/1‑149 (MQ=255)                                                                  aCCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGTCCGAGTCGATCGTCGCTGGAGGCCTGGAACATtactac                                                                                                                  >  6:35427/1‑111 (MQ=255)                                                                     ggCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGcc                                                                         <  7:291546/149‑1 (MQ=255)                                                                         gCCGCTTCACCGCCGTGGTCCTCGGCCAGCGCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTAcc                                                                                                                 >  1:24917/1‑105 (MQ=255)                                                                         gCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTAcc                                                                                                                 <  2:24917/105‑1 (MQ=255)                                                                         gCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCaaa                                                                     <  7:40086/149‑1 (MQ=255)                                                                            gCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGAACGTCGCTGGAGGCCTGGAACATTACTACCAAACCCGCAGCCACAACAGCGCCAACCCCGCAGCCCTGCCCAaaca                                                                   >  5:192640/1‑148 (MQ=255)                                                                                cACCGCCGTGGTGCTCGGCCAGCCCCGGCAGGTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTGGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGGGCCAACCCCGAAGCCCTGCCCAAACAACTa                                                               <  2:2246/148‑1 (MQ=255)                                                                                 aCCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGTCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCGGAAGCCCTGCCCAAACAACTAc                                                              <  2:142337/148‑1 (MQ=255)                                                                                  ccgccgTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAg                                                            <  1:235708/149‑1 (MQ=255)                                                                                         tcgactcggccaccgcctgacagccggggcagcagaactgccggggctggccgagTCGATCGTCGCTGGAGGCCTGGAACATta                                                                                                                      >  1:167091‑M2/56‑84 (MQ=255)                                                                                         tcgactcggccaccgcctgacagccggggcagcagaactgccggggctggccgagTCGATCGTCGCTGGAGGCCTGGAACATta                                                                                                                      <  2:167091‑M2/29‑1 (MQ=255)                                                                                             ctcggccaccgcctgacagccggggcagcagaactgccggggctggccgagTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGCCAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGc                                                 >  7:291925‑M2/52‑149 (MQ=255)                                                                                              TCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGcc                                                <  1:177347‑M1/149‑1 (MQ=255)                                                                                                GGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCt                                              >  4:234306‑M1/1‑149 (MQ=255)                                                                                                                 ctgctgCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGAc                              <  1:22543/148‑1 (MQ=255)                                                                                                                    ctgcCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTgc                          <  7:180770/149‑1 (MQ=255)                                                                                                                      gcCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTgcag                        >  6:125223/1‑149 (MQ=255)                                                                                                                         ccGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTgcagca                      >  3:42969/1‑148 (MQ=255)                                                                                                                          cGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCaaa                    >  5:219756/1‑149 (MQ=255)                                                                                                                           ggCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAAc                   <  4:42969/149‑1 (MQ=255)                                                                                                                                tCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTc               <  2:177347/148‑1 (MQ=255)                                                                                                                                            cgagTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAgg  <  5:125223‑M2/145‑1 (MQ=255)                                                                                                                                            cgagTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAgg  <  6:139580‑M2/145‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGCCGAGTCGATCGTCGCTGGAGGCCTGGAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGG  >  NC_002947/4845231‑4845518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.