New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5474944 =	49 (1.000)	4 (0.090)	4/244	NT	8.3%	intergenic (‑150/‑156)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	5475014 =	43 (0.940)					intergenic (‑220/‑86)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase

TGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCTG  >  NC_002947/5474873‑5475162                                                                                                                                              |                                                                                                                                                      tGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑c                                                                                                                                                <  1:107246/148‑1 (MQ=255)    tAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCac                                                                                                                                             >  1:208329/1‑147 (MQ=255)      gAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACAt                                                                                                                                          <  5:172534/149‑1 (MQ=255)      gAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACAt                                                                                                                                          >  6:172534/1‑149 (MQ=255)       aaaaTGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACAt                                                                                                                                          >  5:114548/1‑148 (MQ=255)             gatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATc                                                                                                                                         <  8:95796/143‑1 (MQ=255)             gatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATc                                                                                                                                         >  7:95796/1‑143 (MQ=255)             gatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTc                                                                                                                                   <  6:114548/149‑1 (MQ=255)                    cAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCa                                                                                                                            <  5:211944/149‑1 (MQ=255)                         tgtAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCt                                                                                                                        <  5:308016/148‑1 (MQ=255)                         tgtAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTc                                                                                                                       >  3:175325/1‑149 (MQ=255)                          gtAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTc                                                                                                                       <  5:143663/148‑1 (MQ=255)                             ggAAAGATGTAACCGTGGTTATCGTGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCGACTGGGATTTGTGTAGGAGCGTGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGAt                                                                                                                    <  6:122650/148‑1 (MQ=255)                              gAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGAtt                                                                                                                   >  2:214484/1‑148 (MQ=255)                                 aGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGc                                                                                                               >  1:184139/1‑149 (MQ=255)                                      tAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCcatt                                                                                                           <  3:114686/148‑1 (MQ=255)                                          cGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTc                                                                                                                             <  7:63714/126‑1 (MQ=255)                                          cGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTc                                                                                                                             >  8:63714/1‑126 (MQ=255)                                           ggggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGc                                                                                                     <  3:259453/149‑1 (MQ=255)                                            gggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCt                                                                                                    <  4:175325/149‑1 (MQ=255)                                             ggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAg                                                                                                                >  2:35507/1‑136 (MQ=255)                                             ggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAg                                                                                                                <  1:35507/136‑1 (MQ=255)                                              gTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTat                                                                                                  >  5:280236/1‑149 (MQ=255)                                                   cGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATcc                                                                                             >  3:5073/1‑149 (MQ=255)                                                            cATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCtctc                                                                                    <  3:229731/149‑1 (MQ=255)                                                               ctcCTGTCGCGGCCCTTAAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCAGCCTCTCCAg                                                                                 >  1:123920/1‑149 (MQ=255)                                                                  cTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTg                                                                                                      <  1:214736/126‑1 (MQ=255)                                                                  cTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTg                                                                                                      >  2:214736/1‑125 (MQ=255)                                                                       gcgGCCCTTTAGCGGGCGCGCCCGCTCCCACTTGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGaa                                                                          <  2:256523/148‑1 (MQ=255)                                                                        CGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACt                                                                        <  6:154970‑M1/149‑1 (MQ=255)                                                                          gccctttcgcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGc                                                                      >  5:295956‑M2/69‑149 (MQ=255)                                                                          cagtgggaGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGc                                                                      >  5:246006/8‑149 (MQ=255)                                                                          GCCTTTTAGCGGGCGCTCCCGCTCCCACTTGGATTTGTGTATGAGCGTGTTTACCATCGAAAGGGCGTGCACTG‑CCAACATGACCGTCCAATTCTGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCGTCTCCAGCCACGAACTGc                                                                      >  2:151973‑M1/1‑149 (MQ=255)                                                                           ccctttcgcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGcc                                                                     >  8:179236‑M2/68‑149 (MQ=255)                                                                                  gcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCAt                                                               <  7:179236‑M2/88‑1 (MQ=255)                                                                                  gCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCAt                                                               <  2:184139/148‑1 (MQ=255)                                                                                   cGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGc                                                             >  2:52139/1‑149 (MQ=255)                                                                                    gggCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGATTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGc                                                             >  4:135642/1‑148 (MQ=255)                                                                                        gcgcCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGcc                                                        >  4:152923/1‑149 (MQ=255)                                                                                            ccGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGc                                                    <  1:52139/149‑1 (MQ=255)                                                                                                          atcccagtgggagcgggcgcgcccgctaaagggccgGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                      <  6:295956‑M2/113‑1 (MQ=255)                                                                                                          aTTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                      <  6:280236/149‑1 (MQ=255)                                                                                                               tctAGGAGCGTGTTTACCCGCGAACGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGAcc                                  <  8:264331/146‑1 (MQ=255)                                                                                                                    gAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                      <  6:116512/139‑1 (MQ=255)                                                                                                                    gAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                      >  5:116512/1‑139 (MQ=255)                                                                                                                    gAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACg                            >  2:108816/1‑149 (MQ=255)                                                                                                                      gCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGcc                          >  2:95573/1‑149 (MQ=255)                                                                                                                          gTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGa                      <  3:79687/149‑1 (MQ=255)                                                                                                                          gTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGa                      <  2:123920/149‑1 (MQ=255)                                                                                                                                         ggccgGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGccc       <  3:135642‑M2/144‑1 (MQ=255)                                                                                                                                              gCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCctgctg  >  7:261578/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                      TGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTG‑CCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCTG  >  NC_002947/5474873‑5475162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.