New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5819865 =	30 (0.610)	3 (0.070)	3/244	NT	8.6%	coding (305/591 nt)	PP_5096	shape determination factor
	?	NC_002947	5819919 =	36 (0.790)					coding (359/591 nt)	PP_5096	shape determination factor

CTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGATCTTCGCCTTCCTG  >  NC_002947/5819774‑5820067                                                                                                                                                  |                                                                                                                                                     ctgGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCAt                                                                                                                                                   >  5:281939/1‑149 (MQ=255)  tgGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATg                                                                                                                                                  <  1:278576/149‑1 (MQ=255)      gttggtAATCCAGGCCTTGCTGATGGTCTTTGTGCTGATGGTCACCTACGGTACCTTCGTCGACGTCCTGCACCTGCTGATGTGGGAGATCATCTTCATCACCTCGCTGTTCACGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGa                                                                                                                                              <  3:75018/147‑1 (MQ=255)              tCCAGGCCTTGCTGATCGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATATTCTGGGTCGAGAAGATCGTCATGGTGATCGTTTcc                                                                                                                                      >  4:250230/1‑149 (MQ=255)                  ggCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTggg                                                                                                                                  <  3:250230/149‑1 (MQ=255)                     cTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTg                                                                                                                               >  1:145606/1‑149 (MQ=255)                          tGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGTCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCAcc                                                                                                                           >  7:187845/1‑148 (MQ=255)                           gATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCAccc                                                                                                                          >  5:280677/1‑148 (MQ=255)                                         tGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCcg                                                                                                           >  7:192759/1‑149 (MQ=255)                                           aTGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCcgg                                                                                                          <  1:104578/148‑1 (MQ=255)                                                      cGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTg                                                                                               <  1:237074/148‑1 (MQ=255)                                                       ggTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGc                                                                                             >  2:47879/1‑149 (MQ=255)                                                            cTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTAc                                                                                         >  5:239486/1‑148 (MQ=255)                                                            cTTCGGCGACGTCCTGCACCTGCTGAAGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCCCCCACCAGCCACAACCCGGCGGCAGAACTGGCCTAc                                                                                         >  8:212980/1‑148 (MQ=255)                                                                    aCGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATgg                                                                                                                                                 >  5:127995/1‑84 (MQ=255)                                                                    aCGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATgg                                                                                                                                                 <  6:127995/84‑1 (MQ=255)                                                                            cACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGt                                                                        <  6:281939/149‑1 (MQ=255)                                                                             aCCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTg                                                                       >  3:128666/1‑149 (MQ=255)                                                                               ctgctgATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCt                                                                     >  8:184378/1‑149 (MQ=255)                                                                               ctgctgATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCt                                                                     >  6:249726/1‑149 (MQ=255)                                                                                     aTGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGgcg                                                                 <  1:47879/147‑1 (MQ=255)                                                                                     aTGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGgcg                                                                 <  5:249726/147‑1 (MQ=255)                                                                                          ggCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTcc                                                          >  8:32555/1‑149 (MQ=255)                                                                                          ggCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTcc                                                          <  7:184378/149‑1 (MQ=255)                                                                                             gatcatcgccacccagaaaatcttcaggaacagcgaggtgatgccgatgatcgTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTccgcc                                                       >  3:6734‑M2/54‑149 (MQ=255)                                                                                               TCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCcgccgc                                                     <  2:248932‑M1/149‑1 (MQ=255)                                                                                                   cgccacccagaaaatcttcaggaacagcgaggtgatgccgatgatcgTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGt                                                             >  1:229366‑M2/48‑137 (MQ=255)                                                                                                   cgccacccagaaaatcttcaggaacagcgaggtgatgccgatgatcgTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGt                                                             <  2:229366‑M2/90‑1 (MQ=255)                                                                                                   CGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTgg                                                 <  4:197220‑M1/149‑1 (MQ=255)                                                                                                     gCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTg                                               >  1:100825/1‑149 (MQ=255)                                                                                                     gCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTg                                               <  2:100825/149‑1 (MQ=255)                                                                                                        tCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCa                                            <  3:302165/149‑1 (MQ=255)                                                                                                            cTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGt                                                                        <  7:282421/117‑1 (MQ=255)                                                                                                            cTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGt                                                                        >  8:282421/1‑117 (MQ=255)                                                                                                            cTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATc                                        >  2:220670/1‑149 (MQ=255)                                                                                                               gCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAAGTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTg                                      <  7:212980/148‑1 (MQ=255)                                                                                                               gCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTgg                                     <  6:280677/149‑1 (MQ=255)                                                                                                                   ttCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGt                                   <  4:128666/147‑1 (MQ=255)                                                                                                                        gAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATg                             >  3:290116/1‑148 (MQ=255)                                                                                                                         aaGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATgg                            <  7:32555/148‑1 (MQ=255)                                                                                                                          aGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGAc                          <  2:145606/149‑1 (MQ=255)                                                                                                                               ttCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACACAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCTAGCCGGTGCTGGCGCCGTTCCGACGACTGGTGCCAAATCTGGGTGGCATGGACAtctc                     >  7:48279/1‑149 (MQ=255)                                                                                                                                 cTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCg                    <  8:192759/148‑1 (MQ=255)                                                                                                                                    ggTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGa                >  4:195515/1‑149 (MQ=255)                                                                                                                                        gCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGATCtt            >  8:209244/1‑149 (MQ=255)                                                                                                                                         cgatgatcgTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGATCTTc           <  4:290116‑M2/140‑1 (MQ=255)                                                                                                                                           atgattgTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGATCTTCGc         >  5:188524‑M2/8‑149 (MQ=255)                                                                                                                                                  tCATGGTGATCGTTTCCTGGGTTGCCCCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGCTCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAAGCTGGGGGGCATGGACATCTCGCCGCTCTTCGCCTTCCTg  >  6:206348/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CTGGCGGTGGTCATCCAGGCCTTGCTGATGGGCTTTGTGCTGATGGTCACCTACGGTACCTTCGGCGACGTCCTGCACCTGCTGATGTGGGCGATCATCGGCATCACCTCGCTGTTCCTGAAGATTTTCTGGGTGGCGATGATCGTCATGGTGATCGTTTCCTGGGTTGCACCCAACAGCCACAACCCGGCGGCCGAACTGGCCTACCAGATCAGCGAGCCGGTGCTGGCGCCGTTCCGCCGCCTGGTGCCAAATCTGGGTGGCATGGACATCTCGCCGATCTTCGCCTTCCTG  >  NC_002947/5819774‑5820067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.