New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 475539	44 (0.780)	3 (0.060)	3/250	NT	7.4%	intergenic (‑35/‑170)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	= 475569	33 (0.610)					intergenic (‑65/‑140)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD

GTAAAACTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/475391‑475539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgtTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTACCCCGGTAATGAATTAAGGTAGCCCTGGATGCCAGCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCTCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGT  <  NC_002947/475569‑475424                                                                                                                                                                                                                                                                                                         GTAAAACTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGAC                                                                                                                                                      <  3:147664/147‑1               TACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGAC                                                                                                                                                      >  5:265310/1‑133               TACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGAC                                                                                                                                                      <  6:265310/133‑1                                      GCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGGTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTA                                                                                                               <  8:64350/149‑1                                           TTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTAC                                                                                                              <  3:80935/145‑1                                           TTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTAC                                                                                                              >  4:80935/1‑145                                                                                                                                                   CGTTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTACCCCGGTAATGAATTAAGGTAGCCCTGGATGCCAGCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCTCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGT  <  2:27031/149‑1                                                                                                                                                   CGTTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTACCCCGGTAATGAATTAAGGTAGCCCTGGATGCCAGCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCTCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGT  <  2:32374/149‑1                                                                                                                                                                                                                                                                                                         GTAAAACTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/475391‑475539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgtTCTCCAGCACACCTTTGTTTTGCCAGGAGCACGTCTACCCCGGTAATGAATTAAGGTAGCCCTGGATGCCAGCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCTCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGT  <  NC_002947/475569‑475424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.