New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 475539	44 (0.780)	3 (0.060)	3/250	NT	7.4%	intergenic (‑35/‑170)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	= 475569	33 (0.610)					intergenic (‑65/‑140)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD

ACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAGCCCCCACAAGGGACGAGCCCATGCTAG  >  NC_002947/475424‑475715                                                                                                                                                  |                                                                                                                                                   acCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacg                                                                                                                                                 <  2:27031‑M2/149‑4 (MQ=255) acCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacg                                                                                                                                                 <  2:32374‑M2/149‑4 (MQ=255)    ggCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCg                                                                                                                                              <  3:355377/149‑1 (MQ=255)             gCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                                                     <  5:317179/149‑1 (MQ=255)                    cgcTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCaa                                                                                                                                      >  1:263877/1‑141 (MQ=255)                    cgcTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCaa                                                                                                                                      <  2:263877/141‑1 (MQ=255)                          aaaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCATGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGtt                                                                                                                        <  5:84647/149‑1 (MQ=255)                          aaaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGt                                                                                                                         >  8:27877/1‑148 (MQ=255)                              gacgCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAAcc                                                                                                                    <  7:294508/149‑1 (MQ=255)                                 gCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCt                                                                                                                  >  3:132900/1‑148 (MQ=255)                                  cAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTa                                                                                                                <  7:27877/149‑1 (MQ=255)                                    gtgCTACGTCGAAGTGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCTGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCTGATGTTAACCCTTAGc                                                                                                              <  8:135914/147‑1 (MQ=255)                                              gAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGTTTGCGGATGTTAACCCTTAGCAAGCCGGaa                                                                                                     <  1:27031/148‑1 (MQ=255)                                              gAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGNTTGCGGATGTTAACCCTTAGCAAGCCGGaa                                                                                                     <  1:32374/148‑1 (MQ=255)                                              gAAGGGGTCGTTCTCTATACTTTTGACGTCTGGCATCCATGGCTACCTTACTTCATTACCGGGGTCGACGTGCTCCTGGCAAACCACAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAAt                                                                                                    <  8:328214/149‑1 (MQ=255)                                                    ttcgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAg                                                                                              <  3:270827/149‑1 (MQ=255)                                                    ttcgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAg                                                                                              >  3:354609/1‑149 (MQ=255)                                                      cgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGc                                                                                             <  3:354538/148‑1 (MQ=255)                                                       gttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCct                                                                                           <  1:124880/149‑1 (MQ=255)                                                        ttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCctc                                                                                          >  3:253450/1‑149 (MQ=255)                                                         tctcTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCctc                                                                                          <  4:253450/148‑1 (MQ=255)                                                                   tttGACGGCTGGCATCCAGGGCTACCTTAATTCATTTCCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGGTGGAGAACGTCGGTTTTCAAGGGTTGCGGTGGTTACCAGTTAGAATGACGTATTGAAAAGCGTCGGAGCGATAAc                                                                               >  8:146990/1‑149 (MQ=255)                                                                       aCGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGc                                                                            <  6:108607/148‑1 (MQ=255)                                                                                     gggCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGa                                                              >  6:228850/1‑148 (MQ=255)                                                                                        cTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                                                     <  5:229119/74‑1 (MQ=255)                                                                                        cTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                                                     >  6:229119/1‑74 (MQ=255)                                                                                           ccTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACgg                                                         <  4:132900/147‑1 (MQ=255)                                                                                             ttAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGAc                                                     >  4:280459/1‑149 (MQ=255)                                                                                                   cATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGCTCGGCACCCGACCAGCGCACTATCAt                                               >  8:238543/1‑149 (MQ=255)                                                                                                    aTTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATg                                              >  2:324407/1‑149 (MQ=255)                                                                                                     ttACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATgc                                             >  1:229385/1‑149 (MQ=255)                                                                                                             gTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaa                                         >  4:80935‑M2/1‑38 (MQ=255)                                                                                                             gTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaa                                         <  3:80935‑M2/145‑108 (MQ=255)                                                                                                              tAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaccccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaaaaagc                                    <  8:64350‑M2/149‑113 (MQ=255)                                                                                                                   gTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAAtt                                >  7:115749/1‑148 (MQ=255)                                                                                                                   gTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGAAACGGGGACTATCATGCGCGGCTTCGAAtt                                >  7:262997/1‑148 (MQ=255)                                                                                                                      cTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAg                             <  5:228850/148‑1 (MQ=255)                                                                                                                      cTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAGc                            <  2:229385/149‑1 (MQ=255)                                                                                                                                     aGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAAGCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAGCCCCCACAAGGGACGa             <  1:195920/149‑1 (MQ=255)                                                                                                                                           gatgtagaACGTTGGTTTTCAAGGGTTGCTGATGATAACCATTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCTGCACCCGACACGGGGACTATCATGCGCGGCTTCTAATTCAGCCCCCACAAGGGACGAGCCCa        <  7:146990/143‑1 (MQ=255)                                                                                                                                                agaACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAGCCCCCACAAGGGACGAGCCCATGCTAg  <  3:280459/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   ACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATTCAGCCCCCACAAGGGACGAGCCCATGCTAG  >  NC_002947/475424‑475715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.