New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 475539	44 (0.780)	3 (0.060)	3/250	NT	7.4%	intergenic (‑35/‑170)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	= 475569	33 (0.610)					intergenic (‑65/‑140)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD

CTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATT  >  NC_002947/475397‑475685                                                                                                                                               |                                                                                                                                                   cTCGCGGCTACTAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCt                                                                                                                                              <  1:161608/149‑1 (MQ=255)        cTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCaaaa                                                                                                                                       <  7:168524/149‑1 (MQ=255)        cTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGATCGATCTATTTAACTTTTACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCaaa                                                                                                                                        >  7:135914/1‑148 (MQ=255)          aCGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTgg                                                                                                                                            >  2:273900/1‑142 (MQ=255)          aCGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTgg                                                                                                                                            <  1:273900/142‑1 (MQ=255)           cGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACa                                                                                                                                     <  6:18585/148‑1 (MQ=255)             aaCTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAg                                                                                                                                  <  4:159527/149‑1 (MQ=255)                ttCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGgtg                                                                                                                               >  5:108607/1‑149 (MQ=255)                   aGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGATGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGCGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGc                                                                                                                            >  4:270827/1‑149 (MQ=255)                     ccAGTACACCGGCTTTTTCGCAGGAGCGCTTGAATCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTg                                                                                                                          <  3:286106/149‑1 (MQ=255)                     ccAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTg                                                                                                                          >  2:124880/1‑149 (MQ=255)                     ccAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTg                                                                                                                          <  3:26380/149‑1 (MQ=255)                       aGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTg                                                                                                                          >  4:354538/1‑147 (MQ=255)                            acCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacg                                                                                                                   <  2:27031‑M2/149‑4 (MQ=255)                            acCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacg                                                                                                                   <  2:32374‑M2/149‑4 (MQ=255)                               ggCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCg                                                                                                                <  3:355377/149‑1 (MQ=255)                                gCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGGTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTtctccagcacacctttgttttgccaggagcacgtcta                                                                                                               <  8:64350‑M1/149‑38 (MQ=255)                                     ttCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTtctccagcacacctttgttttgccaggagcacgtctac                                                                                                              <  3:80935‑M1/145‑39 (MQ=255)                                     ttCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTtctccagcacacctttgttttgccaggagcacgtctac                                                                                                              >  4:80935‑M1/1‑107 (MQ=255)                                        gCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                       <  5:317179/149‑1 (MQ=255)                                               cgcTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCaa                                                                                                        >  1:263877/1‑141 (MQ=255)                                               cgcTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCaa                                                                                                        <  2:263877/141‑1 (MQ=255)                                                     aaaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCATGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGtt                                                                                          <  5:84647/149‑1 (MQ=255)                                                     aaaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGt                                                                                           >  8:27877/1‑148 (MQ=255)                                                      aaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTgg                                                                                                                                            <  4:172347/98‑1 (MQ=255)                                                      aaCGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTgg                                                                                                                                            >  3:172347/1‑98 (MQ=255)                                                         gacgCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAAcc                                                                                      <  7:294508/149‑1 (MQ=255)                                                            gCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCt                                                                                    >  3:132900/1‑148 (MQ=255)                                                             cAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTa                                                                                  <  7:27877/149‑1 (MQ=255)                                                               gtgCTACGTCGAAGTGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCTGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCTGATGTTAACCCTTAGc                                                                                <  8:135914/147‑1 (MQ=255)                                                                         gAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGTTTGCGGATGTTAACCCTTAGCAAGCCGGaa                                                                       <  1:27031/148‑1 (MQ=255)                                                                         gAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGNTTGCGGATGTTAACCCTTAGCAAGCCGGaa                                                                       <  1:32374/148‑1 (MQ=255)                                                                         gAAGGGGTCGTTCTCTATACTTTTGACGTCTGGCATCCATGGCTACCTTACTTCATTACCGGGGTCGACGTGCTCCTGGCAAACCACAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAAt                                                                      <  8:328214/149‑1 (MQ=255)                                                                               ttcgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAg                                                                <  3:270827/149‑1 (MQ=255)                                                                               ttcgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAg                                                                >  3:354609/1‑149 (MQ=255)                                                                                 cgttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGc                                                               <  3:354538/148‑1 (MQ=255)                                                                                  gttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCct                                                             <  1:124880/149‑1 (MQ=255)                                                                                   ttcTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCctc                                                            >  3:253450/1‑149 (MQ=255)                                                                                    tctcTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCctc                                                            <  4:253450/148‑1 (MQ=255)                                                                                              tttGACGGCTGGCATCCAGGGCTACCTTAATTCATTTCCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGGTGGAGAACGTCGGTTTTCAAGGGTTGCGGTGGTTACCAGTTAGAATGACGTATTGAAAAGCGTCGGAGCGATAAc                                                 >  8:146990/1‑149 (MQ=255)                                                                                                  aCGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGc                                              <  6:108607/148‑1 (MQ=255)                                                                                                                gggCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGa                                >  6:228850/1‑148 (MQ=255)                                                                                                                   cTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                       <  5:229119/74‑1 (MQ=255)                                                                                                                   cTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAg                                                                                                       >  6:229119/1‑74 (MQ=255)                                                                                                                      ccTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACgg                           <  4:132900/147‑1 (MQ=255)                                                                                                                        ttAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGAc                       >  4:280459/1‑149 (MQ=255)                                                                                                                              cATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGCTCGGCACCCGACCAGCGCACTATCAt                 >  8:238543/1‑149 (MQ=255)                                                                                                                               aTTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATg                >  2:324407/1‑149 (MQ=255)                                                                                                                                ttACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATgc               >  1:229385/1‑149 (MQ=255)                                                                                                                                        gTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaa           <  3:80935‑M2/145‑108 (MQ=255)                                                                                                                                        gTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaa           >  4:80935‑M2/1‑38 (MQ=255)                                                                                                                                         tAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaccccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaaaaagc      <  8:64350‑M2/149‑113 (MQ=255)                                                                                                                                             cGTtctccagcacacctttgttttgccaggagcacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaaaaagccggt  <  2:27031‑M1/149‑147 (MQ=255)                                                                                                                                             cGTtctccagcacacctttgttttgccaggagcacgtctaccccggtaatgaattaaggtagccctggatgccagccgtcaaagttaaagagaacgaacccttcgacgtagctctgcgtcgtttcaagcgctcctgcgaaaaagccggt  <  2:32374‑M1/149‑147 (MQ=255)                                                                                                                                              gTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAAtt  >  7:115749/1‑148 (MQ=255)                                                                                                                                              gTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGAAACGGGGACTATCATGCGCGGCTTCGAAtt  >  7:262997/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                   CTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGCAGAGCTACGTCGAAGGGTTCGTTCTCTTTAACTTTGACGGCTGGCATCCAGGGCTACCTTAATTCATTACCGGGGTAGACGTGCTCCTGGCAAAACAAAGGTGTGCTGGAGAACGTCGGTTTTCAAGGGTTGCGGATGTTAACCCTTAGCAAGCCGGAATGCAAAGCCTCTGATCGAAAACCGCTGGTCGGCACCCGACACGGGGACTATCATGCGCGGCTTCGAATT  >  NC_002947/475397‑475685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.