New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	655028 =	61 (1.080)	4 (0.070)	4/250	NT	6.8%	coding (1315/1356 nt)	PP_0563	two‑component system response regulator
	?	NC_002947	655064 =	51 (0.940)					coding (1279/1356 nt)	PP_0563	two‑component system response regulator

ACGAAATTCGCCGGCGCTTTGCCGAAATTCTCTACCCGGCGCAGCCGCGGGATTTGCAGTGCACCTTCAGTGCCGGGGTGGTGCAACTGGACGAGGGGCTGGATGCACTGACCATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/655177‑655028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGCGCGGTATT  >  NC_002947/655064‑655211                                                                                                                                                                                                                                                                                                            ACGAAATTCGCCGGCGCTTTGCCGAAATTCTCTACCCGGCGCAGCCGCGGGATTTGCAGTGCACCTTCAGTGCCGGGGTGGTGCAACTGGACGAGGGGCTGGATGCACTGACCATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGC                                                                                                                                                        >  6:141554/1‑148   GAAATTCGCCGGCGCTTTGCCGAAATTCTCTACCCGGCCCAGCCGCGGGATTTGCAGTGCACCTTCAGTGCCGGGGTGGTGCAACTGGACGAGGGGCTGGATGCACTGACCATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCC                                                                                                                                                       >  1:58020/1‑147                                                                                                             TGACCATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCG                                            >  2:86483/1‑148                                                                                                                  ATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAAT                                         <  7:186406/146‑1                                                                                                                  ATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAAT                                         >  8:186406/1‑146                                                                                                                                        CGCTGTACCGGGCCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCA                <  1:86483/149‑1                                                                                                                                                   GCCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGCGCG       <  6:124198/147‑1                                                                                                                                                    CCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGCGCGGT     <  1:55666/148‑1                                                                                                                                                    CCATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGCGCGGT     >  2:55666/1‑148                                                                                                                                                      ATGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGAGCGGTATT  >  3:216232/1‑149                                                                                                                                                                                                                                                                                                            ACGAAATTCGCCGGCGCTTTGCCGAAATTCTCTACCCGGCGCAGCCGCGGGATTTGCAGTGCACCTTCAGTGCCGGGGTGGTGCAACTGGACGAGGGGCTGGATGCACTGACCATGGCCAGTGCAGCGGACGAGGCGCTGTACCGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/655177‑655028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGTCAGTGCATCCAGCCCCTCGTCCAGTTGCACCACCCCGGCACTGAAGGTGCACTGCAAATCCCGCGGCTGCGCCGGGTAGAGAATTTCGGCAAAGCGCCGGCGAATTTCGTCCAGCACCTTGTGTGCGGCATCCAGCGCGGTATT  >  NC_002947/655064‑655211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.